Name | Number of supported studies | Average coverage | |
---|---|---|---|
astrocyte | 15 studies | 45% ± 20% | |
oligodendrocyte precursor cell | 13 studies | 47% ± 20% | |
oligodendrocyte | 11 studies | 31% ± 15% | |
fibroblast | 8 studies | 32% ± 18% | |
endothelial cell | 6 studies | 49% ± 23% | |
adipocyte | 5 studies | 47% ± 9% | |
mast cell | 5 studies | 30% ± 9% | |
pericyte | 5 studies | 22% ± 5% | |
endothelial cell of lymphatic vessel | 5 studies | 44% ± 28% | |
GABAergic neuron | 4 studies | 37% ± 18% | |
microglial cell | 4 studies | 30% ± 9% | |
cardiac muscle cell | 4 studies | 38% ± 2% | |
smooth muscle cell | 4 studies | 26% ± 9% | |
T cell | 4 studies | 43% ± 29% | |
glutamatergic neuron | 3 studies | 54% ± 16% | |
ciliated cell | 3 studies | 29% ± 8% | |
club cell | 3 studies | 29% ± 2% | |
macrophage | 3 studies | 23% ± 6% | |
monocyte | 3 studies | 44% ± 37% | |
type I pneumocyte | 3 studies | 50% ± 33% | |
type II pneumocyte | 3 studies | 46% ± 33% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
brain | 99% | 6541.18 | 2621 / 2642 | 99% | 104.69 | 701 / 705 |
thymus | 47% | 577.92 | 310 / 653 | 86% | 85.55 | 523 / 605 |
skin | 94% | 8570.36 | 1700 / 1809 | 38% | 6.86 | 179 / 472 |
intestine | 51% | 926.39 | 495 / 966 | 67% | 28.33 | 352 / 527 |
lung | 65% | 1054.80 | 378 / 578 | 42% | 9.87 | 490 / 1155 |
stomach | 46% | 790.18 | 166 / 359 | 57% | 22.61 | 163 / 286 |
ovary | 82% | 1300.94 | 147 / 180 | 18% | 5.35 | 78 / 430 |
adrenal gland | 77% | 1004.05 | 199 / 258 | 9% | 0.93 | 21 / 230 |
spleen | 82% | 1693.17 | 197 / 241 | 0% | 0 | 0 / 0 |
esophagus | 26% | 352.20 | 381 / 1445 | 50% | 9.40 | 92 / 183 |
prostate | 69% | 961.90 | 168 / 245 | 6% | 0.54 | 31 / 502 |
heart | 70% | 1323.46 | 603 / 861 | 0% | 0 | 0 / 0 |
uterus | 34% | 416.92 | 58 / 170 | 35% | 7.14 | 159 / 459 |
muscle | 62% | 1098.00 | 498 / 803 | 0% | 0 | 0 / 0 |
bladder | 5% | 64.52 | 1 / 21 | 39% | 11.56 | 197 / 504 |
pancreas | 35% | 511.59 | 116 / 328 | 8% | 0.99 | 15 / 178 |
breast | 23% | 290.83 | 106 / 459 | 6% | 1.52 | 71 / 1118 |
kidney | 2% | 28.42 | 2 / 89 | 24% | 3.20 | 214 / 901 |
tonsil | 0% | 0 | 0 / 0 | 24% | 3.00 | 11 / 45 |
adipose | 12% | 137.65 | 142 / 1204 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 10% | 1.14 | 8 / 80 |
liver | 0% | 0 | 0 / 226 | 5% | 0.71 | 20 / 406 |
lymph node | 0% | 0 | 0 / 0 | 3% | 0.41 | 1 / 29 |
blood vessel | 2% | 37.89 | 27 / 1335 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
peripheral blood | 0% | 0 | 0 / 929 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0042475 | Biological process | odontogenesis of dentin-containing tooth |
GO_0030279 | Biological process | negative regulation of ossification |
GO_0071340 | Biological process | skeletal muscle acetylcholine-gated channel clustering |
GO_0009954 | Biological process | proximal/distal pattern formation |
GO_0097104 | Biological process | postsynaptic membrane assembly |
GO_0006897 | Biological process | endocytosis |
GO_0048813 | Biological process | dendrite morphogenesis |
GO_0050771 | Biological process | negative regulation of axonogenesis |
GO_0007167 | Biological process | enzyme-linked receptor protein signaling pathway |
GO_0060173 | Biological process | limb development |
GO_0042733 | Biological process | embryonic digit morphogenesis |
GO_0001822 | Biological process | kidney development |
GO_0035022 | Biological process | positive regulation of Rac protein signal transduction |
GO_0090090 | Biological process | negative regulation of canonical Wnt signaling pathway |
GO_0009953 | Biological process | dorsal/ventral pattern formation |
GO_0051124 | Biological process | synaptic assembly at neuromuscular junction |
GO_0048699 | Biological process | generation of neurons |
GO_1901631 | Biological process | positive regulation of presynaptic membrane organization |
GO_0050731 | Biological process | positive regulation of peptidyl-tyrosine phosphorylation |
GO_0150094 | Biological process | amyloid-beta clearance by cellular catabolic process |
GO_0001942 | Biological process | hair follicle development |
GO_1904395 | Biological process | positive regulation of skeletal muscle acetylcholine-gated channel clustering |
GO_0016055 | Biological process | Wnt signaling pathway |
GO_0050808 | Biological process | synapse organization |
GO_0097105 | Biological process | presynaptic membrane assembly |
GO_0005886 | Cellular component | plasma membrane |
GO_0031594 | Cellular component | neuromuscular junction |
GO_0097060 | Cellular component | synaptic membrane |
GO_0043025 | Cellular component | neuronal cell body |
GO_0030425 | Cellular component | dendrite |
GO_0009986 | Cellular component | cell surface |
GO_0044853 | Cellular component | plasma membrane raft |
GO_0014069 | Cellular component | postsynaptic density |
GO_0015026 | Molecular function | coreceptor activity |
GO_0042803 | Molecular function | protein homodimerization activity |
GO_0034185 | Molecular function | apolipoprotein binding |
GO_0097110 | Molecular function | scaffold protein binding |
GO_0005509 | Molecular function | calcium ion binding |
GO_0005515 | Molecular function | protein binding |
GO_0030971 | Molecular function | receptor tyrosine kinase binding |
Gene name | LRP4 |
Protein name | LDL receptor related protein 4 Low-density lipoprotein receptor-related protein 4 (LRP-4) (Multiple epidermal growth factor-like domains 7) |
Synonyms | MEGF7 LRP10 KIAA0816 |
Description | FUNCTION: Mediates SOST-dependent inhibition of bone formation. Functions as a specific facilitator of SOST-mediated inhibition of Wnt signaling. Plays a key role in the formation and the maintenance of the neuromuscular junction (NMJ), the synapse between motor neuron and skeletal muscle. Directly binds AGRIN and recruits it to the MUSK signaling complex. Mediates the AGRIN-induced phosphorylation of MUSK, the kinase of the complex. The activation of MUSK in myotubes induces the formation of NMJ by regulating different processes including the transcription of specific genes and the clustering of AChR in the postsynaptic membrane. Alternatively, may be involved in the negative regulation of the canonical Wnt signaling pathway, being able to antagonize the LRP6-mediated activation of this pathway. More generally, has been proposed to function as a cell surface endocytic receptor binding and internalizing extracellular ligands for degradation by lysosomes. May play an essential role in the process of digit differentiation (By similarity). . |
Accessions | O75096 ENST00000534404.1 E9PNJ5 ENST00000378623.6 |