Name | Number of supported studies | Average coverage | |
---|---|---|---|
oligodendrocyte | 13 studies | 43% ± 13% | |
epithelial cell of proximal tubule | 9 studies | 48% ± 24% | |
type II pneumocyte | 6 studies | 26% ± 6% | |
retinal cone cell | 5 studies | 33% ± 15% | |
retinal pigment epithelial cell | 4 studies | 22% ± 4% | |
mesothelial cell | 4 studies | 38% ± 9% | |
retinal rod cell | 4 studies | 43% ± 17% | |
astrocyte | 3 studies | 34% ± 16% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
kidney | 100% | 17284.07 | 89 / 89 | 83% | 99.08 | 752 / 901 |
thymus | 100% | 9972.96 | 653 / 653 | 68% | 22.84 | 412 / 605 |
breast | 59% | 1344.37 | 271 / 459 | 56% | 30.03 | 624 / 1118 |
brain | 74% | 1324.46 | 1965 / 2642 | 16% | 1.62 | 116 / 705 |
lung | 63% | 1092.64 | 364 / 578 | 14% | 2.21 | 167 / 1155 |
skin | 0% | 0.33 | 2 / 1809 | 31% | 7.05 | 147 / 472 |
adipose | 30% | 574.82 | 366 / 1204 | 0% | 0 | 0 / 0 |
liver | 22% | 105.94 | 49 / 226 | 2% | 0.23 | 8 / 406 |
ovary | 5% | 16.00 | 9 / 180 | 18% | 2.91 | 77 / 430 |
eye | 0% | 0 | 0 / 0 | 9% | 1.10 | 7 / 80 |
heart | 7% | 60.64 | 63 / 861 | 0% | 0 | 0 / 0 |
uterus | 1% | 3.69 | 2 / 170 | 3% | 0.41 | 15 / 459 |
stomach | 0% | 2.01 | 1 / 359 | 2% | 0.18 | 6 / 286 |
tonsil | 0% | 0 | 0 / 0 | 2% | 0.33 | 1 / 45 |
bladder | 0% | 0 | 0 / 21 | 2% | 0.69 | 10 / 504 |
esophagus | 0% | 0 | 0 / 1445 | 2% | 0.25 | 3 / 183 |
blood vessel | 1% | 11.92 | 20 / 1335 | 0% | 0 | 0 / 0 |
intestine | 0% | 0.53 | 2 / 966 | 1% | 0.13 | 6 / 527 |
prostate | 1% | 2.26 | 2 / 245 | 0% | 0 | 0 / 502 |
pancreas | 0% | 2.27 | 1 / 328 | 0% | 0 | 0 / 178 |
peripheral blood | 0% | 0.29 | 1 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
adrenal gland | 0% | 0 | 0 / 258 | 0% | 0 | 0 / 230 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 29 |
muscle | 0% | 0 | 0 / 803 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spleen | 0% | 0 | 0 / 241 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0007605 | Biological process | sensory perception of sound |
GO_0035904 | Biological process | aorta development |
GO_0003148 | Biological process | outflow tract septum morphogenesis |
GO_0008283 | Biological process | cell population proliferation |
GO_0006897 | Biological process | endocytosis |
GO_0044321 | Biological process | response to leptin |
GO_0006898 | Biological process | receptor-mediated endocytosis |
GO_0150104 | Biological process | transport across blood-brain barrier |
GO_0030900 | Biological process | forebrain development |
GO_0015889 | Biological process | cobalamin transport |
GO_0050769 | Biological process | positive regulation of neurogenesis |
GO_0001822 | Biological process | kidney development |
GO_0003281 | Biological process | ventricular septum development |
GO_0003223 | Biological process | ventricular compact myocardium morphogenesis |
GO_0030514 | Biological process | negative regulation of BMP signaling pathway |
GO_0071363 | Biological process | cellular response to growth factor stimulus |
GO_0030001 | Biological process | metal ion transport |
GO_0097242 | Biological process | amyloid-beta clearance |
GO_1904447 | Biological process | folate import across plasma membrane |
GO_0042359 | Biological process | vitamin D metabolic process |
GO_0001523 | Biological process | retinoid metabolic process |
GO_0034311 | Biological process | diol metabolic process |
GO_0043066 | Biological process | negative regulation of apoptotic process |
GO_0060068 | Biological process | vagina development |
GO_0140058 | Biological process | neuron projection arborization |
GO_0001843 | Biological process | neural tube closure |
GO_0061156 | Biological process | pulmonary artery morphogenesis |
GO_0043491 | Biological process | phosphatidylinositol 3-kinase/protein kinase B signal transduction |
GO_0060982 | Biological process | coronary artery morphogenesis |
GO_0008584 | Biological process | male gonad development |
GO_0045056 | Biological process | transcytosis |
GO_0015031 | Biological process | protein transport |
GO_0003139 | Biological process | secondary heart field specification |
GO_0006629 | Biological process | lipid metabolic process |
GO_1905167 | Biological process | positive regulation of lysosomal protein catabolic process |
GO_0070447 | Biological process | positive regulation of oligodendrocyte progenitor proliferation |
GO_0031526 | Cellular component | brush border membrane |
GO_0016324 | Cellular component | apical plasma membrane |
GO_0009897 | Cellular component | external side of plasma membrane |
GO_0043235 | Cellular component | receptor complex |
GO_0005886 | Cellular component | plasma membrane |
GO_0005764 | Cellular component | lysosome |
GO_0070062 | Cellular component | extracellular exosome |
GO_0030669 | Cellular component | clathrin-coated endocytic vesicle membrane |
GO_0005794 | Cellular component | Golgi apparatus |
GO_0030425 | Cellular component | dendrite |
GO_0031904 | Cellular component | endosome lumen |
GO_0005783 | Cellular component | endoplasmic reticulum |
GO_0005905 | Cellular component | clathrin-coated pit |
GO_0030424 | Cellular component | axon |
GO_0005765 | Cellular component | lysosomal membrane |
GO_0042562 | Molecular function | hormone binding |
GO_0038024 | Molecular function | cargo receptor activity |
GO_0031994 | Molecular function | insulin-like growth factor I binding |
GO_0051087 | Molecular function | protein-folding chaperone binding |
GO_0005041 | Molecular function | low-density lipoprotein particle receptor activity |
GO_0140318 | Molecular function | protein transporter activity |
GO_0005509 | Molecular function | calcium ion binding |
GO_0005515 | Molecular function | protein binding |
GO_0017124 | Molecular function | SH3 domain binding |
Gene name | LRP2 |
Protein name | LDL receptor related protein 2 Uncharacterized protein LRP2 Low-density lipoprotein receptor-related protein 2 (LRP-2) (Glycoprotein 330) (gp330) (Megalin) Alternative protein LRP2 Low density lipoprotein receptor-related protein II |
Synonyms | |
Description | FUNCTION: Multiligand endocytic receptor (By similarity). Acts together with CUBN to mediate endocytosis of high-density lipoproteins (By similarity). Mediates receptor-mediated uptake of polybasic drugs such as aprotinin, aminoglycosides and polymyxin B (By similarity). In the kidney, mediates the tubular uptake and clearance of leptin (By similarity). Also mediates transport of leptin across the blood-brain barrier through endocytosis at the choroid plexus epithelium (By similarity). Endocytosis of leptin in neuronal cells is required for hypothalamic leptin signaling and leptin-mediated regulation of feeding and body weight (By similarity). Mediates endocytosis and subsequent lysosomal degradation of CST3 in kidney proximal tubule cells (By similarity). Mediates renal uptake of 25-hydroxyvitamin D3 in complex with the vitamin D3 transporter GC/DBP (By similarity). Mediates renal uptake of metallothionein-bound heavy metals . Together with CUBN, mediates renal reabsorption of myoglobin (By similarity). Mediates renal uptake and subsequent lysosomal degradation of APOM (By similarity). Plays a role in kidney selenium homeostasis by mediating renal endocytosis of selenoprotein SEPP1 (By similarity). Mediates renal uptake of the antiapoptotic protein BIRC5/survivin which may be important for functional integrity of the kidney . Mediates renal uptake of matrix metalloproteinase MMP2 in complex with metalloproteinase inhibitor TIMP1 (By similarity). Mediates endocytosis of Sonic hedgehog protein N-product (ShhN), the active product of SHH (By similarity). Also mediates ShhN transcytosis (By similarity). In the embryonic neuroepithelium, mediates endocytic uptake and degradation of BMP4, is required for correct SHH localization in the ventral neural tube and plays a role in patterning of the ventral telencephalon (By similarity). Required at the onset of neurulation to sequester SHH on the apical surface of neuroepithelial cells of the rostral diencephalon ventral midline and to control PTCH1-dependent uptake and intracellular trafficking of SHH (By similarity). During neurulation, required in neuroepithelial cells for uptake of folate bound to the folate receptor FOLR1 which is necessary for neural tube closure (By similarity). In the adult brain, negatively regulates BMP signaling in the subependymal zone which enables neurogenesis to proceed (By similarity). In astrocytes, mediates endocytosis of ALB which is required for the synthesis of the neurotrophic factor oleic acid (By similarity). Involved in neurite branching (By similarity). During optic nerve development, required for SHH-mediated migration and proliferation of oligodendrocyte precursor cells (By similarity). Mediates endocytic uptake and clearance of SHH in the retinal margin which protects retinal progenitor cells from mitogenic stimuli and keeps them quiescent (By similarity). Plays a role in reproductive organ development by mediating uptake in reproductive tissues of androgen and estrogen bound to the sex hormone binding protein SHBG (By similarity). Mediates endocytosis of angiotensin-2 (By similarity). Also mediates endocytosis of angiotensis 1-7 (By similarity). Binds to the complex composed of beta-amyloid protein 40 and CLU/APOJ and mediates its endocytosis and lysosomal degradation (By similarity). Required for embryonic heart development (By similarity). Required for normal hearing, possibly through interaction with estrogen in the inner ear (By similarity). . |
Accessions | E9PC35 L8E983 A0A3B3IT64 Q9NP34 ENST00000649046.1 A0A3B3IRR0 P98164 ENST00000650252.1 ENST00000443831.1 Q53TL0 ENST00000649153.1 Q4ZG84 |