Name | Number of supported studies | Average coverage | |
---|---|---|---|
B cell | 35 studies | 35% ± 17% | |
plasma cell | 32 studies | 77% ± 23% | |
plasmacytoid dendritic cell | 30 studies | 89% ± 12% | |
memory B cell | 16 studies | 41% ± 14% | |
naive B cell | 15 studies | 26% ± 10% | |
plasmablast | 11 studies | 86% ± 13% | |
IgG plasma cell | 10 studies | 79% ± 19% | |
IgA plasma cell | 9 studies | 94% ± 7% | |
immature B cell | 6 studies | 42% ± 20% | |
gamma-delta T cell | 5 studies | 42% ± 20% | |
precursor B cell | 5 studies | 35% ± 9% | |
dendritic cell | 5 studies | 24% ± 5% | |
natural killer cell | 4 studies | 32% ± 16% | |
fibroblast | 4 studies | 38% ± 12% | |
CD8-positive, alpha-beta T cell | 4 studies | 37% ± 14% | |
conventional dendritic cell | 4 studies | 44% ± 23% | |
macrophage | 4 studies | 53% ± 18% | |
germinal center B cell | 4 studies | 39% ± 9% | |
IgM plasma cell | 4 studies | 89% ± 14% | |
mast cell | 4 studies | 42% ± 32% | |
goblet cell | 3 studies | 30% ± 10% | |
CD4-positive, alpha-beta T cell | 3 studies | 37% ± 15% | |
T cell | 3 studies | 33% ± 17% | |
monocyte | 3 studies | 49% ± 7% | |
pro-B cell | 3 studies | 27% ± 2% | |
regulatory T cell | 3 studies | 27% ± 3% | |
glial cell | 3 studies | 35% ± 12% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
intestine | 6 studies | 42% ± 24% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
lung | 91% | 8909.85 | 527 / 578 | 86% | 765.28 | 990 / 1155 |
stomach | 74% | 14114.97 | 267 / 359 | 69% | 510.64 | 198 / 286 |
intestine | 57% | 39120.55 | 546 / 966 | 68% | 536.57 | 359 / 527 |
breast | 47% | 7080.54 | 215 / 459 | 63% | 321.95 | 705 / 1118 |
spleen | 100% | 34824.12 | 240 / 241 | 0% | 0 | 0 / 0 |
bladder | 33% | 3707.29 | 7 / 21 | 49% | 295.90 | 247 / 504 |
pancreas | 14% | 276.29 | 46 / 328 | 62% | 321.33 | 110 / 178 |
tonsil | 0% | 0 | 0 / 0 | 73% | 442.17 | 33 / 45 |
lymph node | 0% | 0 | 0 / 0 | 72% | 661.54 | 21 / 29 |
esophagus | 25% | 1478.47 | 363 / 1445 | 42% | 206.62 | 77 / 183 |
thymus | 28% | 2722.47 | 182 / 653 | 39% | 166.21 | 236 / 605 |
prostate | 34% | 1412.37 | 83 / 245 | 32% | 78.23 | 159 / 502 |
peripheral blood | 63% | 9559.77 | 585 / 929 | 0% | 0 | 0 / 0 |
kidney | 21% | 971.71 | 19 / 89 | 34% | 165.62 | 309 / 901 |
uterus | 13% | 336.72 | 22 / 170 | 40% | 143.91 | 185 / 459 |
skin | 5% | 90.37 | 86 / 1809 | 38% | 167.32 | 178 / 472 |
liver | 31% | 520.48 | 70 / 226 | 11% | 24.23 | 44 / 406 |
ovary | 11% | 199.27 | 19 / 180 | 30% | 84.11 | 129 / 430 |
adipose | 22% | 611.75 | 268 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 16% | 581.24 | 211 / 1335 | 0% | 0 | 0 / 0 |
adrenal gland | 7% | 153.00 | 17 / 258 | 7% | 17.45 | 15 / 230 |
eye | 0% | 0 | 0 / 0 | 6% | 35.30 | 5 / 80 |
heart | 4% | 126.72 | 33 / 861 | 0% | 0 | 0 / 0 |
brain | 0% | 2.86 | 5 / 2642 | 2% | 4.90 | 13 / 705 |
muscle | 1% | 10.86 | 7 / 803 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0003094 | Biological process | glomerular filtration |
GO_0045087 | Biological process | innate immune response |
GO_0019731 | Biological process | antibacterial humoral response |
GO_0065003 | Biological process | protein-containing complex assembly |
GO_0006959 | Biological process | humoral immune response |
GO_0006955 | Biological process | immune response |
GO_0002250 | Biological process | adaptive immune response |
GO_0060267 | Biological process | positive regulation of respiratory burst |
GO_0005615 | Cellular component | extracellular space |
GO_0005576 | Cellular component | extracellular region |
GO_0070062 | Cellular component | extracellular exosome |
GO_0071756 | Cellular component | pentameric IgM immunoglobulin complex |
GO_0071752 | Cellular component | secretory dimeric IgA immunoglobulin complex |
GO_0071751 | Cellular component | secretory IgA immunoglobulin complex |
GO_0072562 | Cellular component | blood microparticle |
GO_0071750 | Cellular component | dimeric IgA immunoglobulin complex |
GO_0071748 | Cellular component | monomeric IgA immunoglobulin complex |
GO_0071757 | Cellular component | hexameric IgM immunoglobulin complex |
GO_0042803 | Molecular function | protein homodimerization activity |
GO_0042834 | Molecular function | peptidoglycan binding |
GO_0019862 | Molecular function | IgA binding |
GO_0003697 | Molecular function | single-stranded DNA binding |
GO_0034987 | Molecular function | immunoglobulin receptor binding |
GO_0031210 | Molecular function | phosphatidylcholine binding |
GO_0030674 | Molecular function | protein-macromolecule adaptor activity |
GO_0003823 | Molecular function | antigen binding |
Gene name | JCHAIN |
Protein name | Joining chain of multimeric IgA and IgM Immunoglobulin J chain (Joining chain of multimeric IgA and IgM) |
Synonyms | IGCJ IGJ |
Description | FUNCTION: Serves to link two monomer units of either IgM or IgA. In the case of IgM, the J chain-joined dimer is a nucleating unit for the IgM pentamer, and in the case of IgA it induces dimers and/or larger polymers. It also helps to bind these immunoglobulins to secretory component. . |
Accessions | ENST00000254801.9 ENST00000510614.5 ENST00000470866.1 ENST00000510437.5 P01591 ENST00000391614.7 D6RHJ6 D6RD17 C9JA05 |