Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 30 studies | 37% ± 15% | |
astrocyte | 20 studies | 45% ± 19% | |
fibroblast | 19 studies | 32% ± 12% | |
macrophage | 15 studies | 39% ± 18% | |
oligodendrocyte | 15 studies | 47% ± 15% | |
microglial cell | 15 studies | 47% ± 13% | |
smooth muscle cell | 15 studies | 26% ± 10% | |
oligodendrocyte precursor cell | 14 studies | 47% ± 16% | |
glutamatergic neuron | 12 studies | 64% ± 22% | |
pericyte | 12 studies | 32% ± 12% | |
GABAergic neuron | 11 studies | 60% ± 21% | |
epithelial cell | 11 studies | 38% ± 19% | |
adipocyte | 10 studies | 44% ± 11% | |
mast cell | 9 studies | 26% ± 9% | |
ciliated cell | 9 studies | 33% ± 12% | |
neuron | 8 studies | 51% ± 17% | |
myeloid cell | 8 studies | 36% ± 14% | |
endothelial cell of lymphatic vessel | 8 studies | 37% ± 12% | |
type I pneumocyte | 8 studies | 38% ± 15% | |
B cell | 7 studies | 28% ± 10% | |
dendritic cell | 7 studies | 37% ± 9% | |
T cell | 7 studies | 29% ± 10% | |
basal cell | 7 studies | 36% ± 19% | |
interneuron | 6 studies | 68% ± 21% | |
retinal ganglion cell | 6 studies | 60% ± 13% | |
retina horizontal cell | 6 studies | 42% ± 16% | |
retinal cone cell | 6 studies | 36% ± 10% | |
myofibroblast cell | 6 studies | 27% ± 12% | |
type II pneumocyte | 6 studies | 36% ± 9% | |
natural killer cell | 6 studies | 24% ± 8% | |
club cell | 6 studies | 34% ± 14% | |
plasma cell | 5 studies | 29% ± 8% | |
amacrine cell | 5 studies | 57% ± 12% | |
retinal rod cell | 5 studies | 37% ± 9% | |
CD8-positive, alpha-beta T cell | 5 studies | 20% ± 5% | |
capillary endothelial cell | 5 studies | 25% ± 9% | |
cardiac muscle cell | 5 studies | 46% ± 10% | |
mesothelial cell | 5 studies | 36% ± 14% | |
Mueller cell | 5 studies | 40% ± 14% | |
regulatory T cell | 5 studies | 20% ± 4% | |
connective tissue cell | 5 studies | 27% ± 6% | |
monocyte | 5 studies | 44% ± 11% | |
goblet cell | 5 studies | 32% ± 25% | |
secretory cell | 4 studies | 20% ± 5% | |
non-classical monocyte | 4 studies | 22% ± 4% | |
granule cell | 4 studies | 49% ± 9% | |
retinal bipolar neuron | 4 studies | 36% ± 11% | |
retinal pigment epithelial cell | 4 studies | 43% ± 20% | |
CD4-positive, alpha-beta T cell | 4 studies | 24% ± 5% | |
lymphocyte | 4 studies | 33% ± 15% | |
abnormal cell | 4 studies | 31% ± 18% | |
endothelial cell of vascular tree | 4 studies | 36% ± 18% | |
respiratory goblet cell | 4 studies | 42% ± 15% | |
kidney loop of Henle epithelial cell | 4 studies | 30% ± 9% | |
renal principal cell | 4 studies | 32% ± 11% | |
classical monocyte | 3 studies | 21% ± 3% | |
podocyte | 3 studies | 30% ± 3% | |
GABAergic interneuron | 3 studies | 64% ± 4% | |
glial cell | 3 studies | 36% ± 8% | |
progenitor cell | 3 studies | 35% ± 5% | |
placental villous trophoblast | 3 studies | 20% ± 3% | |
platelet | 3 studies | 16% ± 0% | |
endothelial cell of artery | 3 studies | 21% ± 4% | |
mononuclear phagocyte | 3 studies | 32% ± 4% | |
vein endothelial cell | 3 studies | 39% ± 20% | |
GABAergic amacrine cell | 3 studies | 62% ± 9% | |
OFF-bipolar cell | 3 studies | 45% ± 3% | |
ON-bipolar cell | 3 studies | 49% ± 4% | |
glycinergic amacrine cell | 3 studies | 51% ± 3% | |
rod bipolar cell | 3 studies | 40% ± 16% | |
hepatocyte | 3 studies | 59% ± 16% | |
muscle cell | 3 studies | 43% ± 22% | |
ependymal cell | 3 studies | 50% ± 17% | |
enteroendocrine cell | 3 studies | 28% ± 15% | |
adventitial cell | 3 studies | 25% ± 6% | |
alveolar macrophage | 3 studies | 53% ± 9% | |
chondrocyte | 3 studies | 33% ± 4% | |
leukocyte | 3 studies | 43% ± 10% | |
transit amplifying cell | 3 studies | 40% ± 34% | |
plasmacytoid dendritic cell | 3 studies | 20% ± 2% | |
kidney distal convoluted tubule epithelial cell | 3 studies | 33% ± 11% | |
renal alpha-intercalated cell | 3 studies | 37% ± 16% | |
mucus secreting cell | 3 studies | 40% ± 3% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 18 studies | 52% ± 21% | |
lung | 9 studies | 30% ± 10% | |
eye | 7 studies | 42% ± 16% | |
heart | 5 studies | 33% ± 10% | |
kidney | 4 studies | 32% ± 11% | |
peripheral blood | 3 studies | 17% ± 1% | |
liver | 3 studies | 41% ± 14% | |
intestine | 3 studies | 24% ± 8% | |
adipose | 3 studies | 38% ± 8% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 2190.59 | 1445 / 1445 | 100% | 20.49 | 183 / 183 |
ovary | 100% | 2965.47 | 180 / 180 | 100% | 18.92 | 429 / 430 |
lung | 100% | 2940.06 | 578 / 578 | 100% | 24.84 | 1151 / 1155 |
breast | 100% | 2819.25 | 459 / 459 | 99% | 26.92 | 1112 / 1118 |
stomach | 100% | 2288.32 | 359 / 359 | 99% | 20.71 | 284 / 286 |
brain | 100% | 4515.99 | 2633 / 2642 | 100% | 29.79 | 702 / 705 |
prostate | 100% | 2131.70 | 245 / 245 | 99% | 27.34 | 496 / 502 |
thymus | 100% | 3236.02 | 653 / 653 | 99% | 30.68 | 597 / 605 |
intestine | 100% | 2810.22 | 966 / 966 | 99% | 21.14 | 520 / 527 |
kidney | 100% | 2873.40 | 89 / 89 | 98% | 32.40 | 886 / 901 |
pancreas | 99% | 1499.83 | 326 / 328 | 99% | 24.66 | 176 / 178 |
adrenal gland | 100% | 4719.07 | 258 / 258 | 98% | 48.95 | 225 / 230 |
uterus | 100% | 2944.38 | 170 / 170 | 97% | 17.97 | 447 / 459 |
bladder | 100% | 2475.86 | 21 / 21 | 97% | 18.92 | 487 / 504 |
skin | 100% | 2783.52 | 1805 / 1809 | 96% | 23.90 | 455 / 472 |
liver | 100% | 1741.94 | 226 / 226 | 93% | 16.32 | 379 / 406 |
adipose | 100% | 2785.58 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 4150.28 | 1335 / 1335 | 0% | 0 | 0 / 0 |
spleen | 100% | 2016.65 | 241 / 241 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 100% | 5.79 | 1 / 1 |
muscle | 99% | 1928.88 | 796 / 803 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 98% | 13.90 | 44 / 45 |
heart | 97% | 2803.60 | 831 / 861 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 90% | 9.48 | 26 / 29 |
peripheral blood | 82% | 1262.25 | 764 / 929 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 80% | 13.12 | 64 / 80 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0070062 | Cellular component | extracellular exosome |
GO_0005886 | Cellular component | plasma membrane |
Gene name | ITFG1 |
Protein name | Integrin alpha FG-GAP repeat containing 1 T-cell immunomodulatory protein (Protein TIP) (Integrin-alpha FG-GAP repeat-containing protein 1) (Linkin) |
Synonyms | TIP CDA08 LNKN-1 |
Description | FUNCTION: Modulator of T-cell function. Has a protective effect in graft versus host disease model (By similarity). . |
Accessions | I3L1X7 ENST00000565940.6 ENST00000565262.1 H3BQ64 F5GXC5 Q8TB96 H3BUJ1 ENST00000544001.6 ENST00000320640.11 ENST00000563730.1 |