Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
bladder | 100% | 2251.48 | 21 / 21 | 100% | 69.77 | 504 / 504 |
esophagus | 100% | 2020.52 | 1445 / 1445 | 100% | 55.43 | 183 / 183 |
kidney | 100% | 1819.15 | 89 / 89 | 100% | 48.41 | 901 / 901 |
liver | 100% | 2068.48 | 226 / 226 | 100% | 49.73 | 406 / 406 |
ovary | 100% | 1505.54 | 180 / 180 | 100% | 61.22 | 430 / 430 |
pancreas | 100% | 2211.10 | 328 / 328 | 100% | 54.61 | 178 / 178 |
skin | 100% | 2254.81 | 1809 / 1809 | 100% | 78.91 | 472 / 472 |
stomach | 100% | 1848.02 | 359 / 359 | 100% | 72.12 | 286 / 286 |
thymus | 100% | 1601.14 | 653 / 653 | 100% | 47.71 | 605 / 605 |
uterus | 100% | 1711.48 | 170 / 170 | 100% | 62.98 | 459 / 459 |
brain | 100% | 1848.11 | 2640 / 2642 | 100% | 72.00 | 705 / 705 |
intestine | 100% | 1991.74 | 966 / 966 | 100% | 81.16 | 526 / 527 |
prostate | 100% | 1855.39 | 245 / 245 | 100% | 60.56 | 501 / 502 |
breast | 100% | 2208.08 | 459 / 459 | 100% | 58.24 | 1115 / 1118 |
adrenal gland | 100% | 2197.85 | 258 / 258 | 100% | 40.30 | 229 / 230 |
lung | 99% | 1697.51 | 575 / 578 | 100% | 62.20 | 1155 / 1155 |
adipose | 100% | 2271.00 | 1204 / 1204 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 100% | 72.20 | 80 / 80 |
lymph node | 0% | 0 | 0 / 0 | 100% | 135.21 | 29 / 29 |
muscle | 100% | 2687.98 | 803 / 803 | 0% | 0 | 0 / 0 |
spleen | 100% | 2035.51 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 55.43 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 53.66 | 1 / 1 |
blood vessel | 100% | 1993.19 | 1334 / 1335 | 0% | 0 | 0 / 0 |
heart | 98% | 1663.05 | 841 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 92% | 1584.74 | 852 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0006364 | Biological process | rRNA processing |
GO_0030490 | Biological process | maturation of SSU-rRNA |
GO_0042274 | Biological process | ribosomal small subunit biogenesis |
GO_0005730 | Cellular component | nucleolus |
GO_0034457 | Cellular component | Mpp10 complex |
GO_0030684 | Cellular component | preribosome |
GO_0005654 | Cellular component | nucleoplasm |
GO_0032040 | Cellular component | small-subunit processome |
GO_0001650 | Cellular component | fibrillar center |
GO_0042134 | Molecular function | rRNA primary transcript binding |
GO_0030515 | Molecular function | snoRNA binding |
GO_0005515 | Molecular function | protein binding |
Gene name | IMP4 |
Protein name | IMP U3 small nucleolar ribonucleoprotein 4 U3 small nucleolar ribonucleoprotein protein IMP4 (U3 snoRNP protein IMP4) (Brix domain-containing protein 4) |
Synonyms | BXDC4 |
Description | FUNCTION: Component of the 60-80S U3 small nucleolar ribonucleoprotein (U3 snoRNP). Required for the early cleavages during pre-18S ribosomal RNA processing . Part of the small subunit (SSU) processome, first precursor of the small eukaryotic ribosomal subunit. During the assembly of the SSU processome in the nucleolus, many ribosome biogenesis factors, an RNA chaperone and ribosomal proteins associate with the nascent pre-rRNA and work in concert to generate RNA folding, modifications, rearrangements and cleavage as well as targeted degradation of pre-ribosomal RNA by the RNA exosome . . |
Accessions | Q96G21 ENST00000452955.1 E7ENR5 B8ZZ47 F8WCN0 H0Y714 ENST00000456713.1 ENST00000259239.8 ENST00000428740.5 ENST00000409649.5 B9A008 ENST00000409935.5 |