Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
ovary | 100% | 7359.02 | 180 / 180 | 100% | 81.31 | 430 / 430 |
thymus | 100% | 4854.43 | 653 / 653 | 100% | 44.71 | 604 / 605 |
prostate | 100% | 6023.00 | 245 / 245 | 100% | 63.60 | 501 / 502 |
breast | 100% | 5596.39 | 459 / 459 | 99% | 60.61 | 1111 / 1118 |
lung | 100% | 9668.77 | 578 / 578 | 99% | 57.73 | 1147 / 1155 |
pancreas | 100% | 6823.15 | 328 / 328 | 99% | 51.48 | 176 / 178 |
skin | 99% | 2580.84 | 1791 / 1809 | 100% | 53.72 | 470 / 472 |
kidney | 100% | 4045.03 | 89 / 89 | 99% | 35.89 | 888 / 901 |
stomach | 100% | 4268.85 | 359 / 359 | 98% | 49.14 | 281 / 286 |
intestine | 100% | 4294.33 | 964 / 966 | 98% | 48.67 | 517 / 527 |
brain | 98% | 2725.30 | 2585 / 2642 | 100% | 41.46 | 705 / 705 |
adrenal gland | 100% | 5709.33 | 258 / 258 | 96% | 32.78 | 221 / 230 |
uterus | 100% | 6383.88 | 170 / 170 | 95% | 43.16 | 436 / 459 |
bladder | 100% | 6058.00 | 21 / 21 | 95% | 39.63 | 477 / 504 |
esophagus | 96% | 3718.38 | 1384 / 1445 | 96% | 38.64 | 176 / 183 |
liver | 73% | 1622.50 | 165 / 226 | 79% | 26.84 | 322 / 406 |
adipose | 100% | 5926.50 | 1204 / 1204 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 100% | 78.13 | 80 / 80 |
lymph node | 0% | 0 | 0 / 0 | 100% | 56.49 | 29 / 29 |
peripheral blood | 100% | 14587.42 | 929 / 929 | 0% | 0 | 0 / 0 |
spleen | 100% | 7479.33 | 241 / 241 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 100% | 12.60 | 1 / 1 |
blood vessel | 100% | 4681.26 | 1333 / 1335 | 0% | 0 | 0 / 0 |
muscle | 100% | 4438.66 | 801 / 803 | 0% | 0 | 0 / 0 |
heart | 99% | 3117.78 | 851 / 861 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 96% | 27.12 | 43 / 45 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0006914 | Biological process | autophagy |
GO_0071397 | Biological process | cellular response to cholesterol |
GO_0032366 | Biological process | intracellular sterol transport |
GO_0005789 | Cellular component | endoplasmic reticulum membrane |
GO_0005829 | Cellular component | cytosol |
GO_0005886 | Cellular component | plasma membrane |
GO_0031410 | Cellular component | cytoplasmic vesicle |
GO_0044232 | Cellular component | organelle membrane contact site |
GO_0140268 | Cellular component | endoplasmic reticulum-plasma membrane contact site |
GO_0005776 | Cellular component | autophagosome |
GO_0015485 | Molecular function | cholesterol binding |
GO_0005515 | Molecular function | protein binding |
GO_0120020 | Molecular function | cholesterol transfer activity |
Gene name | GRAMD1A |
Protein name | GRAM domain containing 1A Protein Aster-A (GRAM domain-containing protein 1A) |
Synonyms | KIAA1533 |
Description | FUNCTION: Cholesterol transporter that mediates non-vesicular transport of cholesterol from the plasma membrane (PM) to the endoplasmic reticulum (ER) (By similarity). Contains unique domains for binding cholesterol and the PM, thereby serving as a molecular bridge for the transfer of cholesterol from the PM to the ER (By similarity). Plays a crucial role in cholesterol homeostasis and has the unique ability to localize to the PM based on the level of membrane cholesterol (By similarity). In lipid-poor conditions localizes to the ER membrane and in response to excess cholesterol in the PM is recruited to the endoplasmic reticulum-plasma membrane contact sites (EPCS) which is mediated by the GRAM domain (By similarity). At the EPCS, the sterol-binding VASt/ASTER domain binds to the cholesterol in the PM and facilitates its transfer from the PM to ER (By similarity). May play a role in tumor progression (By similarity). Plays a role in autophagy regulation and is required for biogenesis of the autophagosome . This function in autophagy requires its cholesterol-transfer activity . . |
Accessions | ENST00000600231.5 M0QZ12 ENST00000680623.1 [Q96CP6-3] Q96CP6 M0R0J9 ENST00000599564.5 ENST00000317991.10 [Q96CP6-1] ENST00000424536.2 S4R3I2 ENST00000411896.6 [Q96CP6-2] |