Name | Number of supported studies | Average coverage | |
---|---|---|---|
type I pneumocyte | 12 studies | 51% ± 22% | |
astrocyte | 12 studies | 33% ± 16% | |
endothelial cell | 10 studies | 27% ± 12% | |
oligodendrocyte precursor cell | 9 studies | 34% ± 14% | |
glutamatergic neuron | 8 studies | 42% ± 25% | |
GABAergic neuron | 7 studies | 46% ± 22% | |
interneuron | 6 studies | 44% ± 25% | |
epithelial cell | 6 studies | 33% ± 16% | |
type II pneumocyte | 6 studies | 36% ± 11% | |
fibroblast | 6 studies | 24% ± 7% | |
neuron | 5 studies | 39% ± 18% | |
retinal cone cell | 5 studies | 31% ± 14% | |
adipocyte | 5 studies | 19% ± 5% | |
club cell | 5 studies | 32% ± 15% | |
podocyte | 4 studies | 61% ± 28% | |
cardiac muscle cell | 4 studies | 25% ± 1% | |
Mueller cell | 4 studies | 22% ± 9% | |
retinal rod cell | 4 studies | 39% ± 7% | |
hepatocyte | 4 studies | 55% ± 15% | |
smooth muscle cell | 4 studies | 18% ± 2% | |
oligodendrocyte | 4 studies | 25% ± 13% | |
renal principal cell | 4 studies | 29% ± 10% | |
GABAergic interneuron | 3 studies | 28% ± 6% | |
granule cell | 3 studies | 25% ± 7% | |
microglial cell | 3 studies | 22% ± 5% | |
retinal pigment epithelial cell | 3 studies | 27% ± 12% | |
basal cell | 3 studies | 28% ± 15% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
brain | 100% | 2666.01 | 2638 / 2642 | 100% | 19.72 | 704 / 705 |
prostate | 100% | 2326.85 | 245 / 245 | 99% | 14.52 | 497 / 502 |
esophagus | 100% | 1977.56 | 1445 / 1445 | 99% | 11.82 | 181 / 183 |
lung | 100% | 4384.22 | 577 / 578 | 99% | 13.66 | 1139 / 1155 |
breast | 100% | 2152.69 | 459 / 459 | 98% | 18.92 | 1100 / 1118 |
intestine | 100% | 1929.67 | 966 / 966 | 98% | 10.20 | 518 / 527 |
stomach | 100% | 1714.43 | 359 / 359 | 98% | 10.88 | 280 / 286 |
liver | 100% | 3879.87 | 226 / 226 | 96% | 11.27 | 391 / 406 |
ovary | 100% | 2660.37 | 180 / 180 | 96% | 11.98 | 414 / 430 |
pancreas | 100% | 2062.45 | 327 / 328 | 96% | 7.83 | 170 / 178 |
kidney | 100% | 4721.67 | 89 / 89 | 94% | 13.01 | 848 / 901 |
thymus | 100% | 5654.71 | 653 / 653 | 93% | 14.17 | 563 / 605 |
uterus | 100% | 2342.80 | 170 / 170 | 88% | 7.57 | 406 / 459 |
bladder | 100% | 1735.48 | 21 / 21 | 86% | 7.44 | 434 / 504 |
skin | 100% | 2042.27 | 1808 / 1809 | 77% | 5.55 | 363 / 472 |
adrenal gland | 100% | 1553.22 | 257 / 258 | 75% | 6.75 | 172 / 230 |
adipose | 100% | 1600.34 | 1204 / 1204 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 100% | 3.52 | 1 / 1 |
blood vessel | 100% | 1833.33 | 1334 / 1335 | 0% | 0 | 0 / 0 |
muscle | 100% | 1551.73 | 801 / 803 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 93% | 6.30 | 42 / 45 |
heart | 93% | 960.18 | 798 / 861 | 0% | 0 | 0 / 0 |
spleen | 91% | 689.00 | 220 / 241 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 75% | 4.91 | 60 / 80 |
lymph node | 0% | 0 | 0 / 0 | 31% | 1.67 | 9 / 29 |
peripheral blood | 18% | 252.78 | 165 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0001839 | Biological process | neural plate morphogenesis |
GO_0001837 | Biological process | epithelial to mesenchymal transition |
GO_0071560 | Biological process | cellular response to transforming growth factor beta stimulus |
GO_0070986 | Biological process | left/right axis specification |
GO_0001701 | Biological process | in utero embryonic development |
GO_0048319 | Biological process | axial mesoderm morphogenesis |
GO_0032525 | Biological process | somite rostral/caudal axis specification |
GO_0048339 | Biological process | paraxial mesoderm development |
GO_0009826 | Biological process | unidimensional cell growth |
GO_0010634 | Biological process | positive regulation of epithelial cell migration |
GO_0070201 | Biological process | regulation of establishment of protein localization |
GO_0010608 | Biological process | post-transcriptional regulation of gene expression |
GO_0006931 | Biological process | substrate-dependent cell migration, cell attachment to substrate |
GO_0003383 | Biological process | apical constriction |
GO_0031032 | Biological process | actomyosin structure organization |
GO_0007492 | Biological process | endoderm development |
GO_0051894 | Biological process | positive regulation of focal adhesion assembly |
GO_0007509 | Biological process | mesoderm migration involved in gastrulation |
GO_0048617 | Biological process | embryonic foregut morphogenesis |
GO_0007398 | Biological process | ectoderm development |
GO_0022408 | Biological process | negative regulation of cell-cell adhesion |
GO_0032587 | Cellular component | ruffle membrane |
GO_0005856 | Cellular component | cytoskeleton |
GO_0005886 | Cellular component | plasma membrane |
GO_0005654 | Cellular component | nucleoplasm |
GO_0001917 | Cellular component | photoreceptor inner segment |
GO_0005925 | Cellular component | focal adhesion |
GO_0005829 | Cellular component | cytosol |
GO_0005912 | Cellular component | adherens junction |
GO_0019904 | Molecular function | protein domain specific binding |
GO_0008092 | Molecular function | cytoskeletal protein binding |
GO_0005515 | Molecular function | protein binding |
Gene name | EPB41L5 |
Protein name | Uncharacterized protein EPB41L5 Band 4.1-like protein 5 (Erythrocyte membrane protein band 4.1-like 5) |
Synonyms | KIAA1548 |
Description | FUNCTION: Plays a role in the formation and organization of tight junctions during the establishment of polarity in epithelial cells. . FUNCTION: Plays a role in the formation and organization of tight junctions during the establishment of polarity in epithelial cells. . |
Accessions | Q53RT1 ENST00000443902.6 [Q9HCM4-4] ENST00000331393.8 [Q9HCM4-2] ENST00000263713.10 [Q9HCM4-1] ENST00000443124.5 [Q9HCM4-2] Q9HCM4 Q4ZG32 ENST00000452780.1 [Q9HCM4-3] Q53T34 |