Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 25 studies | 30% ± 14% | |
fibroblast | 19 studies | 28% ± 8% | |
ciliated cell | 18 studies | 35% ± 13% | |
macrophage | 17 studies | 27% ± 11% | |
astrocyte | 17 studies | 43% ± 20% | |
pericyte | 15 studies | 24% ± 6% | |
smooth muscle cell | 14 studies | 26% ± 7% | |
basal cell | 13 studies | 29% ± 10% | |
glutamatergic neuron | 12 studies | 49% ± 22% | |
epithelial cell | 12 studies | 35% ± 20% | |
classical monocyte | 11 studies | 26% ± 10% | |
microglial cell | 10 studies | 26% ± 9% | |
regulatory T cell | 10 studies | 17% ± 1% | |
type I pneumocyte | 9 studies | 31% ± 8% | |
GABAergic neuron | 9 studies | 46% ± 23% | |
adipocyte | 9 studies | 27% ± 7% | |
mast cell | 8 studies | 22% ± 8% | |
non-classical monocyte | 8 studies | 27% ± 13% | |
oligodendrocyte precursor cell | 8 studies | 26% ± 10% | |
monocyte | 7 studies | 28% ± 8% | |
natural killer cell | 7 studies | 18% ± 3% | |
type II pneumocyte | 7 studies | 27% ± 5% | |
interneuron | 7 studies | 47% ± 24% | |
dendritic cell | 7 studies | 29% ± 12% | |
vein endothelial cell | 7 studies | 26% ± 15% | |
B cell | 6 studies | 20% ± 4% | |
respiratory goblet cell | 6 studies | 33% ± 10% | |
secretory cell | 6 studies | 27% ± 10% | |
neuron | 6 studies | 36% ± 12% | |
myeloid cell | 6 studies | 32% ± 10% | |
club cell | 6 studies | 29% ± 5% | |
T cell | 5 studies | 20% ± 3% | |
plasma cell | 5 studies | 27% ± 9% | |
retina horizontal cell | 5 studies | 27% ± 6% | |
cardiac muscle cell | 5 studies | 27% ± 6% | |
oligodendrocyte | 5 studies | 25% ± 8% | |
CD4-positive, alpha-beta memory T cell | 4 studies | 17% ± 2% | |
squamous epithelial cell | 4 studies | 49% ± 19% | |
CD16-positive, CD56-dim natural killer cell, human | 4 studies | 17% ± 2% | |
retinal bipolar neuron | 4 studies | 28% ± 9% | |
granule cell | 4 studies | 40% ± 11% | |
retinal ganglion cell | 4 studies | 23% ± 5% | |
myofibroblast cell | 4 studies | 25% ± 9% | |
amacrine cell | 4 studies | 19% ± 3% | |
retinal pigment epithelial cell | 4 studies | 31% ± 18% | |
mesothelial cell | 4 studies | 26% ± 4% | |
lymphocyte | 4 studies | 27% ± 4% | |
abnormal cell | 4 studies | 27% ± 10% | |
endothelial cell of vascular tree | 4 studies | 26% ± 11% | |
muscle cell | 4 studies | 43% ± 23% | |
CD8-positive, alpha-beta memory T cell | 4 studies | 17% ± 1% | |
ionocyte | 3 studies | 28% ± 11% | |
CD8-positive, alpha-beta T cell | 3 studies | 23% ± 6% | |
capillary endothelial cell | 3 studies | 17% ± 2% | |
GABAergic interneuron | 3 studies | 38% ± 6% | |
glial cell | 3 studies | 26% ± 11% | |
placental villous trophoblast | 3 studies | 53% ± 23% | |
mononuclear phagocyte | 3 studies | 26% ± 9% | |
Mueller cell | 3 studies | 25% ± 5% | |
glycinergic amacrine cell | 3 studies | 22% ± 4% | |
rod bipolar cell | 3 studies | 44% ± 8% | |
hepatocyte | 3 studies | 56% ± 21% | |
ependymal cell | 3 studies | 39% ± 17% | |
adventitial cell | 3 studies | 25% ± 2% | |
alveolar macrophage | 3 studies | 37% ± 8% | |
gamma-delta T cell | 3 studies | 17% ± 2% | |
goblet cell | 3 studies | 41% ± 31% | |
transit amplifying cell | 3 studies | 34% ± 25% | |
keratinocyte | 3 studies | 28% ± 12% | |
renal alpha-intercalated cell | 3 studies | 31% ± 13% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 16 studies | 39% ± 19% | |
lung | 10 studies | 28% ± 7% | |
eye | 6 studies | 25% ± 14% | |
peripheral blood | 4 studies | 28% ± 6% | |
placenta | 4 studies | 28% ± 8% | |
heart | 4 studies | 23% ± 5% | |
breast | 3 studies | 23% ± 3% | |
liver | 3 studies | 30% ± 13% | |
intestine | 3 studies | 18% ± 1% | |
adipose | 3 studies | 26% ± 3% | |
prostate | 3 studies | 22% ± 4% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 11811.85 | 1445 / 1445 | 100% | 28.80 | 183 / 183 |
lung | 99% | 7295.96 | 574 / 578 | 100% | 18.62 | 1152 / 1155 |
breast | 100% | 6594.55 | 459 / 459 | 99% | 21.01 | 1105 / 1118 |
prostate | 100% | 6056.91 | 244 / 245 | 98% | 19.54 | 491 / 502 |
bladder | 100% | 9882.76 | 21 / 21 | 96% | 15.30 | 486 / 504 |
adrenal gland | 100% | 7351.29 | 258 / 258 | 96% | 15.35 | 221 / 230 |
uterus | 100% | 7812.09 | 170 / 170 | 96% | 20.49 | 440 / 459 |
thymus | 100% | 8253.17 | 652 / 653 | 96% | 28.14 | 579 / 605 |
skin | 100% | 11118.58 | 1808 / 1809 | 96% | 19.34 | 451 / 472 |
brain | 94% | 5865.68 | 2487 / 2642 | 99% | 14.82 | 696 / 705 |
intestine | 98% | 10341.22 | 951 / 966 | 94% | 11.66 | 496 / 527 |
kidney | 97% | 3864.57 | 86 / 89 | 96% | 15.29 | 861 / 901 |
stomach | 93% | 5146.47 | 334 / 359 | 96% | 12.90 | 274 / 286 |
ovary | 96% | 3249.23 | 172 / 180 | 88% | 7.53 | 378 / 430 |
pancreas | 81% | 2329.98 | 267 / 328 | 97% | 13.88 | 173 / 178 |
liver | 79% | 2369.90 | 179 / 226 | 84% | 9.46 | 343 / 406 |
blood vessel | 100% | 11673.67 | 1335 / 1335 | 0% | 0 | 0 / 0 |
muscle | 100% | 40074.79 | 803 / 803 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 100% | 8.52 | 1 / 1 |
adipose | 100% | 6915.19 | 1203 / 1204 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 98% | 22.12 | 44 / 45 |
spleen | 96% | 2923.85 | 231 / 241 | 0% | 0 | 0 / 0 |
heart | 89% | 5014.80 | 765 / 861 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 80% | 10.81 | 64 / 80 |
lymph node | 0% | 0 | 0 / 0 | 79% | 9.95 | 23 / 29 |
peripheral blood | 65% | 2341.09 | 604 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0000278 | Biological process | mitotic cell cycle |
GO_0031122 | Biological process | cytoplasmic microtubule organization |
GO_0031116 | Biological process | positive regulation of microtubule polymerization |
GO_0001578 | Biological process | microtubule bundle formation |
GO_0001726 | Cellular component | ruffle |
GO_0005874 | Cellular component | microtubule |
GO_0044354 | Cellular component | macropinosome |
GO_0005813 | Cellular component | centrosome |
GO_0000776 | Cellular component | kinetochore |
GO_0035371 | Cellular component | microtubule plus-end |
GO_0005882 | Cellular component | intermediate filament |
GO_0005829 | Cellular component | cytosol |
GO_0005938 | Cellular component | cell cortex |
GO_0015630 | Cellular component | microtubule cytoskeleton |
GO_0030659 | Cellular component | cytoplasmic vesicle membrane |
GO_0005634 | Cellular component | nucleus |
GO_0051010 | Molecular function | microtubule plus-end binding |
GO_0015631 | Molecular function | tubulin binding |
GO_0008270 | Molecular function | zinc ion binding |
GO_0008017 | Molecular function | microtubule binding |
GO_0005515 | Molecular function | protein binding |
Gene name | CLIP1 |
Protein name | CAP-Gly domain-containing linker protein 1 (Cytoplasmic linker protein 1) (Cytoplasmic linker protein 170 alpha-2) (CLIP-170) (Reed-Sternberg intermediate filament-associated protein) (Restin) CAP-Gly domain containing linker protein 1 CLIP1 protein |
Synonyms | CYLN1 RSN |
Description | FUNCTION: Binds to the plus end of microtubules and regulates the dynamics of the microtubule cytoskeleton. Promotes microtubule growth and microtubule bundling. Links cytoplasmic vesicles to microtubules and thereby plays an important role in intracellular vesicle trafficking. Plays a role macropinocytosis and endosome trafficking. . |
Accessions | A0A3B3ISJ8 A0A3B3ITA2 ENST00000361654.8 Q86WU4 F5H0N7 ENST00000535290.5 J3KP58 ENST00000545889.6 ENST00000302528.11 [P30622-1] ENST00000358808.6 [P30622-1] F5H367 ENST00000620786.5 [P30622-3] ENST00000536634.6 ENST00000540304.6 P30622 ENST00000539080.1 ENST00000537178.5 [P30622-2] ENST00000541108.1 F5H270 F5H1T5 ENST00000648993.1 Q6P5Z9 ENST00000537123.2 F5H6A0 A0A3B3IS27 |