CALU | OmnibusX

I. Expression across cell types

Name	Number of supported studies	Average coverage
fibroblast	43 studies	42% ± 18%	Explore
endothelial cell	33 studies	30% ± 13%	Explore
pericyte	27 studies	34% ± 18%	Explore
smooth muscle cell	27 studies	31% ± 11%	Explore
endothelial cell of lymphatic vessel	18 studies	32% ± 9%	Explore
connective tissue cell	18 studies	46% ± 21%	Explore
myofibroblast cell	14 studies	41% ± 12%	Explore
macrophage	14 studies	25% ± 5%	Explore
plasma cell	12 studies	31% ± 12%	Explore
epithelial cell	12 studies	35% ± 19%	Explore
vein endothelial cell	10 studies	22% ± 5%	Explore
endothelial cell of artery	8 studies	29% ± 9%	Explore
basal cell	8 studies	23% ± 8%	Explore
endothelial cell of vascular tree	8 studies	23% ± 6%	Explore
plasmablast	7 studies	38% ± 23%	Explore
mesothelial cell	7 studies	34% ± 12%	Explore
adipocyte	7 studies	27% ± 19%	Explore
abnormal cell	6 studies	38% ± 13%	Explore
capillary endothelial cell	6 studies	24% ± 3%	Explore
ciliated cell	6 studies	25% ± 9%	Explore
astrocyte	6 studies	22% ± 5%	Explore
classical monocyte	5 studies	19% ± 3%	Explore
myeloid cell	5 studies	26% ± 6%	Explore
adventitial cell	5 studies	41% ± 11%	Explore
oligodendrocyte precursor cell	5 studies	21% ± 5%	Explore
goblet cell	5 studies	37% ± 23%	Explore
oligodendrocyte	5 studies	19% ± 3%	Explore
conventional dendritic cell	4 studies	24% ± 4%	Explore
type II pneumocyte	4 studies	25% ± 15%	Explore
glial cell	4 studies	29% ± 18%	Explore
dendritic cell	4 studies	23% ± 4%	Explore
mast cell	4 studies	25% ± 9%	Explore
secretory cell	4 studies	25% ± 11%	Explore
muscle cell	4 studies	39% ± 20%	Explore
neuron	4 studies	29% ± 9%	Explore
luminal cell of prostate epithelium	4 studies	20% ± 5%	Explore
glutamatergic neuron	4 studies	44% ± 18%	Explore
alveolar macrophage	4 studies	20% ± 3%	Explore
type B pancreatic cell	3 studies	33% ± 10%	Explore
hematopoietic precursor cell	3 studies	24% ± 1%	Explore
progenitor cell	3 studies	33% ± 15%	Explore
neural crest cell	3 studies	32% ± 6%	Explore
extravillous trophoblast	3 studies	82% ± 8%	Explore
placental villous trophoblast	3 studies	52% ± 22%	Explore
club cell	3 studies	26% ± 6%	Explore
Schwann cell	3 studies	34% ± 19%	Explore
retinal pigment epithelial cell	3 studies	35% ± 13%	Explore
mucus secreting cell	3 studies	25% ± 1%	Explore
mononuclear phagocyte	3 studies	24% ± 7%	Explore
lymphocyte	3 studies	25% ± 6%	Explore
respiratory goblet cell	3 studies	28% ± 15%	Explore
cardiac muscle cell	3 studies	19% ± 3%	Explore
chondrocyte	3 studies	38% ± 20%	Explore
luminal hormone-sensing cell of mammary gland	3 studies	17% ± 2%	Explore
myoepithelial cell	3 studies	30% ± 17%	Explore
type I pneumocyte	3 studies	23% ± 7%	Explore
GABAergic neuron	3 studies	48% ± 5%	Explore
megakaryocyte-erythroid progenitor cell	3 studies	28% ± 10%	Explore
transit amplifying cell	3 studies	26% ± 12%	Explore
plasmacytoid dendritic cell	3 studies	21% ± 5%	Explore
IgA plasma cell	3 studies	21% ± 3%	Explore

II. Expression across tissues

Name	Number of supported studies	Average coverage
lung	8 studies	28% ± 10%	Explore
intestine	6 studies	30% ± 15%	Explore
heart	5 studies	20% ± 5%	Explore
brain	5 studies	37% ± 10%	Explore
uterus	4 studies	30% ± 13%	Explore
pancreas	3 studies	33% ± 12%	Explore
placenta	3 studies	56% ± 12%	Explore
eye	3 studies	24% ± 7%	Explore
skin	3 studies	24% ± 5%	Explore
liver	3 studies	33% ± 8%	Explore
adipose	3 studies	30% ± 18%	Explore

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
ovary	100%	7487.46	180 / 180	100%	112.91	430 / 430
breast	100%	8422.10	459 / 459	100%	162.64	1115 / 1118
lung	100%	11411.23	576 / 578	100%	154.75	1152 / 1155
prostate	100%	10261.24	244 / 245	99%	118.76	499 / 502
uterus	100%	13399.64	170 / 170	98%	113.44	452 / 459
esophagus	99%	10669.26	1426 / 1445	99%	96.03	181 / 183
intestine	98%	11581.18	950 / 966	98%	101.35	518 / 527
skin	97%	24433.31	1757 / 1809	99%	341.15	469 / 472
stomach	96%	7170.89	346 / 359	99%	101.55	283 / 286
bladder	100%	13859.67	21 / 21	95%	104.91	479 / 504
thymus	100%	8021.91	651 / 653	94%	81.47	571 / 605
pancreas	93%	3619.36	304 / 328	98%	124.39	175 / 178
adrenal gland	99%	6447.00	255 / 258	85%	60.15	196 / 230
kidney	85%	3926.22	76 / 89	96%	93.77	868 / 901
brain	58%	1765.04	1529 / 2642	98%	95.53	691 / 705
liver	71%	3018.11	160 / 226	78%	47.80	317 / 406
adipose	100%	10648.71	1204 / 1204	0%	0	0 / 0
blood vessel	100%	20933.20	1335 / 1335	0%	0	0 / 0
ureter	0%	0	0 / 0	100%	40.07	1 / 1
spleen	98%	5111.06	236 / 241	0%	0	0 / 0
heart	98%	15593.01	842 / 861	0%	0	0 / 0
tonsil	0%	0	0 / 0	98%	81.55	44 / 45
muscle	98%	5273.82	784 / 803	0%	0	0 / 0
eye	0%	0	0 / 0	86%	56.69	69 / 80
lymph node	0%	0	0 / 0	72%	33.46	21 / 29
peripheral blood	21%	1234.53	193 / 929	0%	0	0 / 0
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0

III. Associated gene sets

GO_0008150	Biological process	biological_process
GO_0042470	Cellular component	melanosome
GO_0005788	Cellular component	endoplasmic reticulum lumen
GO_0005783	Cellular component	endoplasmic reticulum
GO_0033018	Cellular component	sarcoplasmic reticulum lumen
GO_0005576	Cellular component	extracellular region
GO_0005794	Cellular component	Golgi apparatus
GO_0016020	Cellular component	membrane
GO_0005789	Cellular component	endoplasmic reticulum membrane
GO_0005509	Molecular function	calcium ion binding
GO_0005515	Molecular function	protein binding

IV. Literature review

[source]

Gene name	CALU
Protein name	Calumenin Calumenin (Crocalbin) (IEF SSP 9302)
Synonyms	hCG_41656 tcag7.422
Description	FUNCTION: Involved in regulation of vitamin K-dependent carboxylation of multiple N-terminal glutamate residues. Seems to inhibit gamma-carboxylase GGCX. Binds 7 calcium ions with a low affinity (By similarity). . FUNCTION: Involved in regulation of vitamin K-dependent carboxylation of multiple N-terminal glutamate residues. Seems to inhibit gamma-carboxylase GGCX. Binds 7 calcium ions with a low affinity. .
Accessions	H0Y875 Q6IAW5 ENST00000249364.9 [O43852-1] ENST00000479257.5 [O43852-3] ENST00000542996.7 [O43852-4] ENST00000535011.6 [O43852-10] ENST00000493278.1 ENST00000449187.7 [O43852-2] O43852

CALU report

I. Expression across cell types

II. Expression across tissues

III. Associated gene sets

IV. Literature review