Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 19 studies | 26% ± 8% | |
macrophage | 11 studies | 29% ± 7% | |
oligodendrocyte | 10 studies | 31% ± 13% | |
alveolar macrophage | 8 studies | 43% ± 13% | |
endothelial cell of lymphatic vessel | 8 studies | 30% ± 11% | |
capillary endothelial cell | 8 studies | 18% ± 4% | |
oligodendrocyte precursor cell | 6 studies | 34% ± 14% | |
microglial cell | 4 studies | 29% ± 4% | |
retinal rod cell | 4 studies | 26% ± 5% | |
vein endothelial cell | 4 studies | 29% ± 19% | |
endothelial cell of vascular tree | 4 studies | 26% ± 16% | |
naive B cell | 3 studies | 18% ± 2% | |
B cell | 3 studies | 21% ± 2% | |
epithelial cell | 3 studies | 28% ± 9% | |
myeloid cell | 3 studies | 20% ± 4% | |
GABAergic neuron | 3 studies | 34% ± 4% | |
glutamatergic neuron | 3 studies | 35% ± 8% | |
goblet cell | 3 studies | 26% ± 9% | |
interneuron | 3 studies | 31% ± 16% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
breast | 100% | 2483.82 | 458 / 459 | 97% | 33.41 | 1084 / 1118 |
brain | 97% | 1062.62 | 2572 / 2642 | 99% | 26.69 | 698 / 705 |
thymus | 100% | 1492.39 | 650 / 653 | 96% | 19.07 | 583 / 605 |
lung | 100% | 4015.12 | 578 / 578 | 95% | 24.26 | 1097 / 1155 |
prostate | 96% | 1057.98 | 234 / 245 | 99% | 23.57 | 497 / 502 |
intestine | 99% | 1731.62 | 960 / 966 | 94% | 18.44 | 497 / 527 |
bladder | 100% | 1596.57 | 21 / 21 | 93% | 20.90 | 468 / 504 |
stomach | 99% | 1010.41 | 354 / 359 | 93% | 16.67 | 265 / 286 |
kidney | 93% | 1119.90 | 83 / 89 | 98% | 34.09 | 879 / 901 |
adrenal gland | 100% | 5520.28 | 258 / 258 | 90% | 27.84 | 207 / 230 |
esophagus | 88% | 905.56 | 1267 / 1445 | 88% | 12.81 | 161 / 183 |
uterus | 79% | 675.38 | 134 / 170 | 86% | 19.36 | 397 / 459 |
ovary | 68% | 640.64 | 122 / 180 | 82% | 10.68 | 354 / 430 |
skin | 72% | 1554.10 | 1307 / 1809 | 62% | 10.10 | 293 / 472 |
pancreas | 30% | 144.56 | 100 / 328 | 97% | 22.57 | 173 / 178 |
lymph node | 0% | 0 | 0 / 0 | 100% | 30.55 | 29 / 29 |
spleen | 100% | 4576.21 | 241 / 241 | 0% | 0 | 0 / 0 |
adipose | 100% | 2546.45 | 1203 / 1204 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 96% | 41.53 | 77 / 80 |
tonsil | 0% | 0 | 0 / 0 | 93% | 16.48 | 42 / 45 |
muscle | 93% | 1676.60 | 749 / 803 | 0% | 0 | 0 / 0 |
heart | 90% | 780.31 | 776 / 861 | 0% | 0 | 0 / 0 |
liver | 39% | 230.82 | 89 / 226 | 50% | 7.33 | 204 / 406 |
peripheral blood | 81% | 1104.74 | 757 / 929 | 0% | 0 | 0 / 0 |
blood vessel | 74% | 734.67 | 983 / 1335 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0090181 | Biological process | regulation of cholesterol metabolic process |
GO_0055091 | Biological process | phospholipid homeostasis |
GO_0034436 | Biological process | glycoprotein transport |
GO_0010887 | Biological process | negative regulation of cholesterol storage |
GO_0055085 | Biological process | transmembrane transport |
GO_0071403 | Biological process | cellular response to high density lipoprotein particle stimulus |
GO_0008203 | Biological process | cholesterol metabolic process |
GO_0043691 | Biological process | reverse cholesterol transport |
GO_0032367 | Biological process | intracellular cholesterol transport |
GO_0033700 | Biological process | phospholipid efflux |
GO_0034375 | Biological process | high-density lipoprotein particle remodeling |
GO_0010745 | Biological process | negative regulation of macrophage derived foam cell differentiation |
GO_0050714 | Biological process | positive regulation of protein secretion |
GO_0034374 | Biological process | low-density lipoprotein particle remodeling |
GO_0033993 | Biological process | response to lipid |
GO_1902004 | Biological process | positive regulation of amyloid-beta formation |
GO_0010875 | Biological process | positive regulation of cholesterol efflux |
GO_0034204 | Biological process | lipid translocation |
GO_0033344 | Biological process | cholesterol efflux |
GO_0042987 | Biological process | amyloid precursor protein catabolic process |
GO_0045542 | Biological process | positive regulation of cholesterol biosynthetic process |
GO_0042632 | Biological process | cholesterol homeostasis |
GO_0009897 | Cellular component | external side of plasma membrane |
GO_0005886 | Cellular component | plasma membrane |
GO_0005789 | Cellular component | endoplasmic reticulum membrane |
GO_0005739 | Cellular component | mitochondrion |
GO_0055037 | Cellular component | recycling endosome |
GO_0005794 | Cellular component | Golgi apparatus |
GO_0000139 | Cellular component | Golgi membrane |
GO_0005768 | Cellular component | endosome |
GO_0042803 | Molecular function | protein homodimerization activity |
GO_0043531 | Molecular function | ADP binding |
GO_0090554 | Molecular function | phosphatidylcholine floppase activity |
GO_0015485 | Molecular function | cholesterol binding |
GO_0005543 | Molecular function | phospholipid binding |
GO_0120020 | Molecular function | cholesterol transfer activity |
GO_0019534 | Molecular function | toxin transmembrane transporter activity |
GO_0140328 | Molecular function | floppase activity |
GO_0005524 | Molecular function | ATP binding |
GO_0046982 | Molecular function | protein heterodimerization activity |
GO_0005515 | Molecular function | protein binding |
GO_0034041 | Molecular function | ABC-type sterol transporter activity |
GO_0016887 | Molecular function | ATP hydrolysis activity |
Gene name | ABCG1 |
Protein name | ATP-binding cassette sub-family G member 1 (EC 7.6.2.-) (ATP-binding cassette transporter 8) (White protein homolog) ATP binding cassette subfamily G member 1 |
Synonyms | WHT1 ABC8 |
Description | FUNCTION: Catalyzes the efflux of phospholipids such as sphingomyelin, cholesterol and its oxygenated derivatives like 7beta-hydroxycholesterol and this transport is coupled to hydrolysis of ATP . The lipid efflux is ALB-dependent . Is an active component of the macrophage lipid export complex. Could also be involved in intracellular lipid transport processes. The role in cellular lipid homeostasis may not be limited to macrophages. Prevents cell death by transporting cytotoxic 7beta-hydroxycholesterol . . |
Accessions | P45844 ENST00000347800.6 [P45844-5] ENST00000398449.8 [P45844-4] ENST00000398457.6 [P45844-3] ENST00000343687.7 [P45844-2] C9JKD9 ENST00000361802.6 [P45844-1] E9PGV9 ENST00000398437.1 ENST00000450121.5 |