Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 25 studies | 48% ± 16% | |
macrophage | 25 studies | 44% ± 26% | |
astrocyte | 19 studies | 63% ± 18% | |
microglial cell | 16 studies | 68% ± 16% | |
oligodendrocyte | 15 studies | 67% ± 13% | |
oligodendrocyte precursor cell | 15 studies | 73% ± 19% | |
fibroblast | 14 studies | 37% ± 16% | |
glutamatergic neuron | 12 studies | 57% ± 23% | |
GABAergic neuron | 11 studies | 55% ± 19% | |
pericyte | 10 studies | 38% ± 14% | |
myeloid cell | 10 studies | 47% ± 21% | |
smooth muscle cell | 9 studies | 36% ± 9% | |
adipocyte | 9 studies | 36% ± 12% | |
neuron | 8 studies | 49% ± 25% | |
epithelial cell | 8 studies | 39% ± 19% | |
dendritic cell | 8 studies | 41% ± 16% | |
endothelial cell of lymphatic vessel | 8 studies | 42% ± 15% | |
monocyte | 7 studies | 56% ± 25% | |
classical monocyte | 7 studies | 23% ± 5% | |
mast cell | 7 studies | 25% ± 10% | |
interneuron | 6 studies | 57% ± 9% | |
ciliated cell | 6 studies | 42% ± 16% | |
B cell | 5 studies | 28% ± 9% | |
basal cell | 5 studies | 54% ± 21% | |
club cell | 5 studies | 37% ± 13% | |
type I pneumocyte | 5 studies | 45% ± 10% | |
type II pneumocyte | 5 studies | 42% ± 5% | |
non-classical monocyte | 4 studies | 24% ± 10% | |
cholangiocyte | 4 studies | 65% ± 22% | |
hepatocyte | 4 studies | 51% ± 30% | |
glial cell | 4 studies | 45% ± 14% | |
granule cell | 4 studies | 49% ± 11% | |
cardiac muscle cell | 4 studies | 31% ± 4% | |
mesothelial cell | 4 studies | 37% ± 15% | |
vein endothelial cell | 4 studies | 46% ± 15% | |
Mueller cell | 4 studies | 64% ± 10% | |
amacrine cell | 4 studies | 39% ± 19% | |
retina horizontal cell | 4 studies | 37% ± 22% | |
retinal cone cell | 4 studies | 27% ± 9% | |
retinal rod cell | 4 studies | 23% ± 11% | |
endothelial cell of sinusoid | 3 studies | 35% ± 11% | |
hepatic stellate cell | 3 studies | 46% ± 21% | |
differentiation-committed oligodendrocyte precursor | 3 studies | 69% ± 6% | |
GABAergic interneuron | 3 studies | 49% ± 9% | |
endothelial cell of artery | 3 studies | 28% ± 10% | |
mononuclear phagocyte | 3 studies | 45% ± 15% | |
GABAergic amacrine cell | 3 studies | 40% ± 12% | |
glycinergic amacrine cell | 3 studies | 31% ± 15% | |
retinal ganglion cell | 3 studies | 40% ± 16% | |
endothelial cell of vascular tree | 3 studies | 36% ± 12% | |
retinal pigment epithelial cell | 3 studies | 40% ± 9% | |
connective tissue cell | 3 studies | 34% ± 12% | |
ependymal cell | 3 studies | 54% ± 18% | |
neutrophil | 3 studies | 37% ± 19% | |
T cell | 3 studies | 31% ± 9% | |
alveolar macrophage | 3 studies | 67% ± 13% | |
capillary endothelial cell | 3 studies | 48% ± 12% | |
natural killer cell | 3 studies | 24% ± 5% | |
respiratory goblet cell | 3 studies | 50% ± 14% | |
goblet cell | 3 studies | 46% ± 34% | |
mucus secreting cell | 3 studies | 43% ± 4% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 1991.59 | 1445 / 1445 | 100% | 17.42 | 183 / 183 |
brain | 100% | 2143.26 | 2642 / 2642 | 100% | 27.98 | 704 / 705 |
lung | 100% | 3651.99 | 578 / 578 | 100% | 14.82 | 1151 / 1155 |
intestine | 100% | 2566.49 | 966 / 966 | 99% | 11.41 | 524 / 527 |
stomach | 100% | 1955.70 | 359 / 359 | 99% | 12.83 | 284 / 286 |
ovary | 100% | 2005.58 | 180 / 180 | 99% | 12.80 | 426 / 430 |
pancreas | 100% | 1219.38 | 328 / 328 | 98% | 14.45 | 175 / 178 |
breast | 100% | 1764.11 | 459 / 459 | 98% | 14.47 | 1098 / 1118 |
prostate | 100% | 2491.67 | 245 / 245 | 97% | 11.77 | 489 / 502 |
kidney | 100% | 1307.31 | 89 / 89 | 97% | 13.47 | 877 / 901 |
uterus | 100% | 1449.34 | 170 / 170 | 97% | 12.97 | 444 / 459 |
thymus | 100% | 2011.59 | 652 / 653 | 97% | 10.95 | 586 / 605 |
adrenal gland | 100% | 1318.62 | 258 / 258 | 97% | 9.93 | 222 / 230 |
skin | 100% | 1476.52 | 1807 / 1809 | 95% | 11.80 | 447 / 472 |
bladder | 100% | 1924.24 | 21 / 21 | 94% | 10.00 | 475 / 504 |
liver | 97% | 776.80 | 220 / 226 | 57% | 3.92 | 231 / 406 |
adipose | 100% | 1916.75 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 1939.26 | 1335 / 1335 | 0% | 0 | 0 / 0 |
spleen | 100% | 1953.00 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 15.48 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 3.52 | 1 / 1 |
peripheral blood | 96% | 1611.61 | 888 / 929 | 0% | 0 | 0 / 0 |
heart | 94% | 825.44 | 812 / 861 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 94% | 11.13 | 75 / 80 |
lymph node | 0% | 0 | 0 / 0 | 86% | 8.18 | 25 / 29 |
muscle | 81% | 514.70 | 648 / 803 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0021773 | Biological process | striatal medium spiny neuron differentiation |
GO_0031462 | Cellular component | Cul2-RING ubiquitin ligase complex |
GO_0008270 | Molecular function | zinc ion binding |
Gene name | ZSWIM6 |
Protein name | Zinc finger SWIM domain-containing protein 6 |
Synonyms | KIAA1577 |
Description | FUNCTION: involved in nervous system development, important for striatal morphology and motor regulation. . |
Accessions | Q9HCJ5 ENST00000252744.6 |