Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 23 studies | 39% ± 17% | |
astrocyte | 15 studies | 47% ± 19% | |
ciliated cell | 13 studies | 34% ± 17% | |
macrophage | 13 studies | 44% ± 18% | |
oligodendrocyte | 13 studies | 48% ± 15% | |
oligodendrocyte precursor cell | 12 studies | 39% ± 16% | |
fibroblast | 12 studies | 40% ± 13% | |
glutamatergic neuron | 11 studies | 53% ± 25% | |
microglial cell | 11 studies | 53% ± 14% | |
GABAergic neuron | 10 studies | 50% ± 22% | |
pericyte | 10 studies | 35% ± 14% | |
adipocyte | 9 studies | 48% ± 10% | |
mast cell | 9 studies | 30% ± 9% | |
neuron | 8 studies | 46% ± 25% | |
epithelial cell | 8 studies | 40% ± 17% | |
smooth muscle cell | 8 studies | 32% ± 10% | |
myeloid cell | 8 studies | 34% ± 15% | |
T cell | 7 studies | 40% ± 11% | |
basal cell | 7 studies | 40% ± 24% | |
endothelial cell of lymphatic vessel | 7 studies | 42% ± 13% | |
retinal cone cell | 6 studies | 50% ± 22% | |
dendritic cell | 6 studies | 42% ± 13% | |
mesothelial cell | 6 studies | 40% ± 14% | |
club cell | 6 studies | 40% ± 20% | |
interneuron | 5 studies | 68% ± 15% | |
retina horizontal cell | 5 studies | 34% ± 13% | |
cardiac muscle cell | 5 studies | 36% ± 11% | |
monocyte | 5 studies | 47% ± 15% | |
type I pneumocyte | 5 studies | 48% ± 9% | |
type II pneumocyte | 5 studies | 52% ± 10% | |
granule cell | 4 studies | 41% ± 13% | |
CD4-positive, alpha-beta T cell | 4 studies | 32% ± 9% | |
CD8-positive, alpha-beta T cell | 4 studies | 23% ± 8% | |
Mueller cell | 4 studies | 38% ± 13% | |
amacrine cell | 4 studies | 37% ± 12% | |
retinal rod cell | 4 studies | 51% ± 11% | |
natural killer cell | 4 studies | 34% ± 6% | |
ionocyte | 3 studies | 22% ± 8% | |
classical monocyte | 3 studies | 17% ± 2% | |
hematopoietic precursor cell | 3 studies | 32% ± 18% | |
glial cell | 3 studies | 29% ± 15% | |
progenitor cell | 3 studies | 40% ± 11% | |
plasma cell | 3 studies | 24% ± 7% | |
vein endothelial cell | 3 studies | 36% ± 18% | |
GABAergic amacrine cell | 3 studies | 39% ± 13% | |
glycinergic amacrine cell | 3 studies | 30% ± 12% | |
retinal ganglion cell | 3 studies | 36% ± 8% | |
endothelial cell of vascular tree | 3 studies | 40% ± 16% | |
hepatocyte | 3 studies | 62% ± 16% | |
retinal pigment epithelial cell | 3 studies | 47% ± 21% | |
hematopoietic stem cell | 3 studies | 31% ± 13% | |
B cell | 3 studies | 27% ± 6% | |
alveolar macrophage | 3 studies | 54% ± 9% | |
capillary endothelial cell | 3 studies | 30% ± 9% | |
respiratory goblet cell | 3 studies | 52% ± 20% | |
lymphocyte | 3 studies | 47% ± 14% | |
goblet cell | 3 studies | 42% ± 28% | |
leukocyte | 3 studies | 58% ± 8% | |
mucus secreting cell | 3 studies | 39% ± 9% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 4357.40 | 1445 / 1445 | 100% | 21.59 | 183 / 183 |
prostate | 100% | 4704.50 | 245 / 245 | 100% | 21.43 | 501 / 502 |
skin | 100% | 4103.65 | 1809 / 1809 | 100% | 19.92 | 471 / 472 |
breast | 100% | 3928.92 | 459 / 459 | 100% | 24.42 | 1114 / 1118 |
ovary | 100% | 7533.52 | 180 / 180 | 100% | 16.14 | 428 / 430 |
thymus | 100% | 4181.15 | 653 / 653 | 99% | 14.66 | 600 / 605 |
lung | 100% | 4690.95 | 578 / 578 | 99% | 17.91 | 1145 / 1155 |
intestine | 100% | 4327.49 | 966 / 966 | 99% | 13.08 | 522 / 527 |
bladder | 100% | 4919.71 | 21 / 21 | 99% | 13.06 | 499 / 504 |
brain | 100% | 2839.89 | 2635 / 2642 | 99% | 23.57 | 699 / 705 |
uterus | 100% | 5980.48 | 170 / 170 | 99% | 13.94 | 453 / 459 |
stomach | 100% | 2853.93 | 359 / 359 | 98% | 14.63 | 281 / 286 |
pancreas | 99% | 1544.36 | 325 / 328 | 98% | 14.54 | 175 / 178 |
kidney | 100% | 2623.64 | 89 / 89 | 97% | 11.99 | 874 / 901 |
adrenal gland | 100% | 3409.33 | 258 / 258 | 95% | 11.60 | 218 / 230 |
liver | 100% | 1568.11 | 226 / 226 | 81% | 6.70 | 329 / 406 |
adipose | 100% | 3981.15 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 3831.90 | 1335 / 1335 | 0% | 0 | 0 / 0 |
spleen | 100% | 3448.03 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 13.07 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 6.90 | 1 / 1 |
muscle | 99% | 1761.51 | 795 / 803 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 99% | 11.78 | 79 / 80 |
heart | 97% | 2104.06 | 837 / 861 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 93% | 9.88 | 27 / 29 |
peripheral blood | 85% | 2644.29 | 790 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_2000291 | Biological process | regulation of myoblast proliferation |
GO_2001224 | Biological process | positive regulation of neuron migration |
GO_0007517 | Biological process | muscle organ development |
GO_0045944 | Biological process | positive regulation of transcription by RNA polymerase II |
GO_0006357 | Biological process | regulation of transcription by RNA polymerase II |
GO_0005654 | Cellular component | nucleoplasm |
GO_0005634 | Cellular component | nucleus |
GO_1990841 | Molecular function | promoter-specific chromatin binding |
GO_0046872 | Molecular function | metal ion binding |
Gene name | ZNF609 |
Protein name | Zinc finger protein 609 ZNF609 protein Alternative protein ZNF609 |
Synonyms | KIAA0295 |
Description | FUNCTION: Transcription factor, which activates RAG1, and possibly RAG2, transcription. Through the regulation of RAG1/2 expression, may regulate thymocyte maturation. Along with NIPBL and the multiprotein complex Integrator, promotes cortical neuron migration during brain development by regulating the transcription of crucial genes in this process. Preferentially binds promoters containing paused RNA polymerase II. Up-regulates the expression of SEMA3A, NRP1, PLXND1 and GABBR2 genes, among others. .; FUNCTION: [Isoform 2]: Involved in the regulation of myoblast proliferation during myogenesis. . |
Accessions | ENST00000326648.5 [O15014-1] E7ERY8 A5PKW6 L8ECF6 O15014 ENST00000416172.1 |