Name | Number of supported studies | Average coverage | |
---|---|---|---|
astrocyte | 17 studies | 40% ± 17% | |
oligodendrocyte precursor cell | 16 studies | 63% ± 21% | |
oligodendrocyte | 12 studies | 35% ± 12% | |
endothelial cell | 11 studies | 31% ± 16% | |
GABAergic neuron | 8 studies | 46% ± 17% | |
epithelial cell | 8 studies | 26% ± 10% | |
glutamatergic neuron | 7 studies | 35% ± 19% | |
interneuron | 6 studies | 40% ± 8% | |
neuron | 6 studies | 36% ± 18% | |
retinal cone cell | 6 studies | 30% ± 10% | |
pericyte | 5 studies | 25% ± 17% | |
adipocyte | 5 studies | 19% ± 4% | |
basal cell | 5 studies | 28% ± 15% | |
endothelial cell of lymphatic vessel | 5 studies | 28% ± 9% | |
retinal bipolar neuron | 4 studies | 25% ± 2% | |
retinal pigment epithelial cell | 4 studies | 30% ± 13% | |
cardiac muscle cell | 4 studies | 24% ± 5% | |
retinal rod cell | 4 studies | 29% ± 8% | |
fibroblast | 4 studies | 23% ± 5% | |
differentiation-committed oligodendrocyte precursor | 3 studies | 53% ± 3% | |
GABAergic interneuron | 3 studies | 32% ± 16% | |
glial cell | 3 studies | 37% ± 10% | |
granule cell | 3 studies | 30% ± 6% | |
progenitor cell | 3 studies | 36% ± 6% | |
amacrine cell | 3 studies | 29% ± 5% | |
OFF-bipolar cell | 3 studies | 34% ± 9% | |
ON-bipolar cell | 3 studies | 29% ± 10% | |
rod bipolar cell | 3 studies | 24% ± 6% | |
ependymal cell | 3 studies | 37% ± 20% | |
club cell | 3 studies | 20% ± 3% | |
ciliated cell | 3 studies | 22% ± 7% | |
smooth muscle cell | 3 studies | 18% ± 1% | |
type I pneumocyte | 3 studies | 24% ± 8% | |
type II pneumocyte | 3 studies | 20% ± 6% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
prostate | 100% | 2168.44 | 245 / 245 | 99% | 13.87 | 499 / 502 |
brain | 100% | 1232.73 | 2635 / 2642 | 100% | 16.73 | 702 / 705 |
thymus | 100% | 2340.88 | 653 / 653 | 98% | 11.07 | 592 / 605 |
skin | 100% | 1554.90 | 1809 / 1809 | 96% | 10.23 | 452 / 472 |
esophagus | 100% | 1827.05 | 1445 / 1445 | 96% | 11.45 | 175 / 183 |
adrenal gland | 100% | 2760.80 | 258 / 258 | 94% | 5.97 | 216 / 230 |
intestine | 100% | 1557.89 | 965 / 966 | 92% | 5.84 | 484 / 527 |
kidney | 100% | 1135.93 | 89 / 89 | 91% | 8.96 | 816 / 901 |
lung | 100% | 1045.31 | 576 / 578 | 87% | 7.34 | 1004 / 1155 |
ovary | 100% | 2383.11 | 180 / 180 | 82% | 6.20 | 354 / 430 |
bladder | 100% | 1331.67 | 21 / 21 | 81% | 4.71 | 409 / 504 |
uterus | 100% | 1984.06 | 170 / 170 | 79% | 5.31 | 364 / 459 |
breast | 100% | 1633.41 | 459 / 459 | 75% | 6.13 | 841 / 1118 |
stomach | 51% | 537.13 | 182 / 359 | 91% | 6.55 | 261 / 286 |
pancreas | 37% | 151.20 | 121 / 328 | 94% | 5.43 | 167 / 178 |
muscle | 100% | 1497.87 | 803 / 803 | 0% | 0 | 0 / 0 |
spleen | 100% | 1119.63 | 241 / 241 | 0% | 0 | 0 / 0 |
adipose | 100% | 1322.54 | 1203 / 1204 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 99% | 9.17 | 79 / 80 |
heart | 96% | 1081.80 | 824 / 861 | 0% | 0 | 0 / 0 |
blood vessel | 95% | 718.29 | 1263 / 1335 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 82% | 5.71 | 37 / 45 |
liver | 10% | 37.31 | 23 / 226 | 5% | 0.22 | 21 / 406 |
lymph node | 0% | 0 | 0 / 0 | 7% | 0.39 | 2 / 29 |
peripheral blood | 2% | 7.21 | 15 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0006325 | Biological process | chromatin organization |
GO_0045944 | Biological process | positive regulation of transcription by RNA polymerase II |
GO_0005654 | Cellular component | nucleoplasm |
GO_0005634 | Cellular component | nucleus |
GO_0003677 | Molecular function | DNA binding |
GO_0005515 | Molecular function | protein binding |
GO_0046872 | Molecular function | metal ion binding |
Gene name | ZNF462 |
Protein name | Zinc finger protein 462 Zinc finger protein 462 (Zinc finger PBX1-interacting protein) (ZFPIP) |
Synonyms | KIAA1803 |
Description | FUNCTION: Zinc finger nuclear factor involved in transcription by regulating chromatin structure and organization . Involved in the pluripotency and differentiation of embryonic stem cells by regulating SOX2, POU5F1/OCT4, and NANOG . By binding PBX1, prevents the heterodimerization of PBX1 and HOXA9 and their binding to DNA (By similarity). Regulates neuronal development and neural cell differentiation . . |
Accessions | Q96JM2 H3BLX4 ENST00000472574.1 ENST00000441147.6 [Q96JM2-2] H0Y6H9 U3KQU3 ENST00000427098.1 ENST00000277225.10 [Q96JM2-1] ENST00000374686.6 |