Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 11 studies | 30% ± 12% | |
astrocyte | 10 studies | 40% ± 16% | |
oligodendrocyte | 10 studies | 27% ± 10% | |
oligodendrocyte precursor cell | 9 studies | 28% ± 11% | |
glutamatergic neuron | 8 studies | 37% ± 24% | |
fibroblast | 8 studies | 26% ± 9% | |
adipocyte | 7 studies | 27% ± 6% | |
GABAergic neuron | 7 studies | 34% ± 18% | |
interneuron | 6 studies | 37% ± 22% | |
macrophage | 6 studies | 25% ± 6% | |
microglial cell | 6 studies | 22% ± 5% | |
neuron | 5 studies | 35% ± 22% | |
endothelial cell of lymphatic vessel | 5 studies | 32% ± 7% | |
epithelial cell | 4 studies | 30% ± 14% | |
ciliated cell | 4 studies | 21% ± 8% | |
Mueller cell | 4 studies | 35% ± 18% | |
erythrocyte | 4 studies | 41% ± 17% | |
pericyte | 4 studies | 27% ± 8% | |
smooth muscle cell | 4 studies | 24% ± 4% | |
GABAergic interneuron | 3 studies | 19% ± 4% | |
granule cell | 3 studies | 18% ± 3% | |
plasma cell | 3 studies | 22% ± 3% | |
amacrine cell | 3 studies | 21% ± 8% | |
neural progenitor cell | 3 studies | 27% ± 6% | |
ependymal cell | 3 studies | 40% ± 11% | |
club cell | 3 studies | 23% ± 9% | |
type I pneumocyte | 3 studies | 22% ± 8% | |
basal cell | 3 studies | 35% ± 20% | |
goblet cell | 3 studies | 41% ± 23% | |
transit amplifying cell | 3 studies | 38% ± 29% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 804.11 | 1442 / 1445 | 100% | 11.24 | 183 / 183 |
breast | 100% | 1243.67 | 459 / 459 | 99% | 9.26 | 1103 / 1118 |
lung | 99% | 859.53 | 575 / 578 | 99% | 7.33 | 1143 / 1155 |
pancreas | 100% | 743.52 | 328 / 328 | 98% | 5.91 | 175 / 178 |
prostate | 100% | 833.38 | 245 / 245 | 98% | 6.68 | 491 / 502 |
intestine | 100% | 867.20 | 966 / 966 | 97% | 7.21 | 510 / 527 |
uterus | 100% | 1566.32 | 170 / 170 | 97% | 6.92 | 443 / 459 |
stomach | 100% | 792.67 | 359 / 359 | 97% | 7.73 | 276 / 286 |
thymus | 100% | 830.08 | 652 / 653 | 96% | 5.50 | 582 / 605 |
bladder | 100% | 1013.10 | 21 / 21 | 96% | 6.48 | 484 / 504 |
ovary | 100% | 1234.05 | 180 / 180 | 95% | 5.06 | 407 / 430 |
adrenal gland | 100% | 910.40 | 258 / 258 | 92% | 4.64 | 212 / 230 |
brain | 93% | 384.07 | 2451 / 2642 | 99% | 7.79 | 700 / 705 |
skin | 100% | 1482.99 | 1808 / 1809 | 90% | 7.52 | 427 / 472 |
kidney | 98% | 453.93 | 87 / 89 | 90% | 5.45 | 815 / 901 |
liver | 94% | 368.49 | 213 / 226 | 45% | 1.98 | 184 / 406 |
adipose | 100% | 1161.45 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 998.37 | 1335 / 1335 | 0% | 0 | 0 / 0 |
spleen | 100% | 776.15 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 98% | 7.59 | 44 / 45 |
muscle | 98% | 421.89 | 785 / 803 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 97% | 6.36 | 28 / 29 |
heart | 91% | 421.17 | 786 / 861 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 57% | 2.54 | 46 / 80 |
peripheral blood | 35% | 582.59 | 325 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0032508 | Biological process | DNA duplex unwinding |
GO_0090656 | Biological process | t-circle formation |
GO_1902570 | Biological process | protein localization to nucleolus |
GO_0006268 | Biological process | DNA unwinding involved in DNA replication |
GO_0008340 | Biological process | determination of adult lifespan |
GO_0006302 | Biological process | double-strand break repair |
GO_0010225 | Biological process | response to UV-C |
GO_0006974 | Biological process | DNA damage response |
GO_0090399 | Biological process | replicative senescence |
GO_0009267 | Biological process | cellular response to starvation |
GO_0006260 | Biological process | DNA replication |
GO_0040009 | Biological process | regulation of growth rate |
GO_0098530 | Biological process | positive regulation of strand invasion |
GO_0071480 | Biological process | cellular response to gamma radiation |
GO_0000724 | Biological process | double-strand break repair via homologous recombination |
GO_0031297 | Biological process | replication fork processing |
GO_0044806 | Biological process | G-quadruplex DNA unwinding |
GO_0006259 | Biological process | DNA metabolic process |
GO_0032201 | Biological process | telomere maintenance via semi-conservative replication |
GO_0000723 | Biological process | telomere maintenance |
GO_0000731 | Biological process | DNA synthesis involved in DNA repair |
GO_0061820 | Biological process | telomeric D-loop disassembly |
GO_0090398 | Biological process | cellular senescence |
GO_0006284 | Biological process | base-excision repair |
GO_0006979 | Biological process | response to oxidative stress |
GO_0051345 | Biological process | positive regulation of hydrolase activity |
GO_0005730 | Cellular component | nucleolus |
GO_0016607 | Cellular component | nuclear speck |
GO_0005813 | Cellular component | centrosome |
GO_0005657 | Cellular component | replication fork |
GO_0005654 | Cellular component | nucleoplasm |
GO_0005737 | Cellular component | cytoplasm |
GO_0005694 | Cellular component | chromosome |
GO_0000781 | Cellular component | chromosome, telomeric region |
GO_0005634 | Cellular component | nucleus |
GO_0003677 | Molecular function | DNA binding |
GO_0042803 | Molecular function | protein homodimerization activity |
GO_0061821 | Molecular function | telomeric D-loop binding |
GO_0004527 | Molecular function | exonuclease activity |
GO_1905773 | Molecular function | 8-hydroxy-2'-deoxyguanosine DNA binding |
GO_0003682 | Molecular function | chromatin binding |
GO_0044877 | Molecular function | protein-containing complex binding |
GO_0009378 | Molecular function | four-way junction helicase activity |
GO_0061849 | Molecular function | telomeric G-quadruplex DNA binding |
GO_0032405 | Molecular function | MutLalpha complex binding |
GO_0000405 | Molecular function | bubble DNA binding |
GO_0000287 | Molecular function | magnesium ion binding |
GO_0008408 | Molecular function | 3'-5' exonuclease activity |
GO_0030145 | Molecular function | manganese ion binding |
GO_0000400 | Molecular function | four-way junction DNA binding |
GO_0051880 | Molecular function | G-quadruplex DNA binding |
GO_0070337 | Molecular function | 3'-flap-structured DNA binding |
GO_0003678 | Molecular function | DNA helicase activity |
GO_0005524 | Molecular function | ATP binding |
GO_0061749 | Molecular function | forked DNA-dependent helicase activity |
GO_0016853 | Molecular function | isomerase activity |
GO_0000403 | Molecular function | Y-form DNA binding |
GO_0005515 | Molecular function | protein binding |
GO_0016887 | Molecular function | ATP hydrolysis activity |
GO_0043138 | Molecular function | 3'-5' DNA helicase activity |
Gene name | WRN |
Protein name | Bifunctional 3'-5' exonuclease/ATP-dependent helicase WRN (DNA helicase, RecQ-like type 3) (RecQ protein-like 2) (Werner syndrome protein) [Includes: 3'-5' exonuclease (EC 3.1.-.-); ATP-dependent helicase (EC 5.6.2.4) (DNA 3'-5' helicase WRN)] WRN RecQ like helicase |
Synonyms | RECQL2 RECQ3 |
Description | FUNCTION: Multifunctional enzyme that has magnesium and ATP-dependent 3'-5' DNA-helicase activity on partially duplex substrates . Also has 3'->5' exonuclease activity towards double-stranded DNA with a 5'-overhang . Has no nuclease activity towards single-stranded DNA or blunt-ended double-stranded DNA . Helicase activity is most efficient with (d)ATP, but (d)CTP will substitute with reduced efficiency; strand displacement is enhanced by single-strand binding-protein (heterotrimeric replication protein A complex, RPA1, RPA2, RPA3) . Binds preferentially to DNA substrates containing alternate secondary structures, such as replication forks and Holliday junctions. May play an important role in the dissociation of joint DNA molecules that can arise as products of homologous recombination, at stalled replication forks or during DNA repair. Alleviates stalling of DNA polymerases at the site of DNA lesions. Important for genomic integrity. Plays a role in the formation of DNA replication focal centers; stably associates with foci elements generating binding sites for RP-A (By similarity). Plays a role in double-strand break repair after gamma-irradiation . Depletion leads to chromosomal breaks and genome instability . . |
Accessions | ENST00000298139.7 A0A494C0Y6 A0A494C0M3 Q14191 ENST00000650667.1 ENST00000651642.1 |