WFDC2 report

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I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
basal cell	18 studies	55% ± 18%	Explore
ciliated cell	18 studies	69% ± 24%	Explore
epithelial cell	18 studies	61% ± 30%	Explore
secretory cell	11 studies	89% ± 10%	Explore
club cell	10 studies	82% ± 25%	Explore
type I pneumocyte	9 studies	47% ± 17%	Explore
type II pneumocyte	9 studies	57% ± 24%	Explore
goblet cell	8 studies	52% ± 21%	Explore
respiratory goblet cell	7 studies	83% ± 25%	Explore
ionocyte	6 studies	51% ± 25%	Explore
kidney loop of Henle epithelial cell	6 studies	53% ± 17%	Explore
mucus secreting cell	6 studies	50% ± 24%	Explore
deuterosomal cell	4 studies	80% ± 10%	Explore
duct epithelial cell	4 studies	98% ± 1%	Explore
kidney distal convoluted tubule epithelial cell	4 studies	55% ± 17%	Explore
abnormal cell	4 studies	38% ± 14%	Explore
brush cell	4 studies	53% ± 19%	Explore
neuroendocrine cell	4 studies	77% ± 14%	Explore
luminal hormone-sensing cell of mammary gland	4 studies	71% ± 8%	Explore
hillock cell	3 studies	65% ± 27%	Explore
squamous epithelial cell	3 studies	80% ± 11%	Explore
kidney connecting tubule epithelial cell	3 studies	87% ± 5%	Explore
renal beta-intercalated cell	3 studies	72% ± 38%	Explore
renal principal cell	3 studies	84% ± 14%	Explore
progenitor cell	3 studies	33% ± 10%	Explore
mesothelial cell	3 studies	47% ± 18%	Explore
serous secreting cell	3 studies	84% ± 3%	Explore
smooth muscle cell	3 studies	19% ± 1%	Explore
luminal cell of prostate epithelium	3 studies	32% ± 7%	Explore

II. Expression across tissues

sc-RNAseq dataData table

Name	Number of supported studies	Average coverage
lung	10 studies	41% ± 21%	Explore
kidney	5 studies	28% ± 8%	Explore
uterus	3 studies	43% ± 26%	Explore
breast	3 studies	23% ± 8%	Explore
prostate	3 studies	47% ± 15%	Explore

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
thymus	100%	6309.49	653 / 653	77%	407.06	467 / 605
lung	97%	3627.93	562 / 578	59%	507.80	683 / 1155
kidney	100%	19833.75	89 / 89	40%	483.41	360 / 901
bladder	100%	3540.48	21 / 21	33%	178.85	164 / 504
ovary	19%	160.19	34 / 180	98%	3181.12	423 / 430
prostate	100%	5478.07	244 / 245	17%	47.11	87 / 502
intestine	88%	2549.67	848 / 966	20%	93.39	103 / 527
breast	61%	2104.79	280 / 459	37%	226.32	419 / 1118
uterus	42%	1970.56	72 / 170	52%	1178.43	237 / 459
stomach	73%	754.59	263 / 359	14%	62.47	40 / 286
pancreas	35%	301.36	116 / 328	52%	291.17	92 / 178
skin	48%	425.18	860 / 1809	3%	11.02	12 / 472
esophagus	15%	372.87	211 / 1445	18%	85.62	33 / 183
brain	22%	158.08	589 / 2642	0%	0	0 / 705
tonsil	0%	0	0 / 0	22%	93.33	10 / 45
liver	17%	242.72	39 / 226	4%	12.64	16 / 406
adipose	20%	204.79	237 / 1204	0%	0	0 / 0
blood vessel	18%	306.60	242 / 1335	0%	0	0 / 0
peripheral blood	13%	302.54	119 / 929	0%	0	0 / 0
heart	2%	16.70	16 / 861	0%	0	0 / 0
adrenal gland	1%	20.36	2 / 258	1%	1.94	2 / 230
muscle	1%	8.41	7 / 803	0%	0	0 / 0
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
eye	0%	0	0 / 0	0%	0	0 / 80
gingiva	0%	0	0 / 0	0%	0	0 / 0
lymph node	0%	0	0 / 0	0%	0	0 / 29
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0
spleen	0%	0	0 / 241	0%	0	0 / 0
ureter	0%	0	0 / 0	0%	0	0 / 1