Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 20 studies | 29% ± 12% | |
astrocyte | 11 studies | 34% ± 16% | |
fibroblast | 11 studies | 29% ± 11% | |
macrophage | 10 studies | 32% ± 11% | |
microglial cell | 10 studies | 28% ± 10% | |
oligodendrocyte | 10 studies | 34% ± 12% | |
glutamatergic neuron | 9 studies | 39% ± 26% | |
oligodendrocyte precursor cell | 9 studies | 38% ± 15% | |
adipocyte | 9 studies | 31% ± 9% | |
GABAergic neuron | 8 studies | 42% ± 22% | |
pericyte | 7 studies | 32% ± 14% | |
endothelial cell of lymphatic vessel | 7 studies | 29% ± 10% | |
interneuron | 6 studies | 43% ± 23% | |
epithelial cell | 6 studies | 27% ± 13% | |
dendritic cell | 5 studies | 21% ± 7% | |
monocyte | 5 studies | 24% ± 6% | |
smooth muscle cell | 5 studies | 27% ± 4% | |
type I pneumocyte | 5 studies | 25% ± 8% | |
type II pneumocyte | 5 studies | 23% ± 6% | |
neuron | 4 studies | 47% ± 24% | |
cardiac muscle cell | 4 studies | 31% ± 3% | |
mast cell | 4 studies | 22% ± 5% | |
retinal rod cell | 4 studies | 21% ± 4% | |
basal cell | 4 studies | 30% ± 16% | |
ciliated cell | 4 studies | 21% ± 7% | |
club cell | 4 studies | 25% ± 8% | |
GABAergic interneuron | 3 studies | 26% ± 6% | |
granule cell | 3 studies | 26% ± 4% | |
mesothelial cell | 3 studies | 25% ± 8% | |
Mueller cell | 3 studies | 22% ± 6% | |
amacrine cell | 3 studies | 20% ± 6% | |
retina horizontal cell | 3 studies | 24% ± 7% | |
retinal cone cell | 3 studies | 22% ± 9% | |
rod bipolar cell | 3 studies | 46% ± 24% | |
endothelial cell of vascular tree | 3 studies | 32% ± 16% | |
myeloid cell | 3 studies | 24% ± 5% | |
hepatocyte | 3 studies | 47% ± 12% | |
connective tissue cell | 3 studies | 20% ± 4% | |
ependymal cell | 3 studies | 32% ± 16% | |
T cell | 3 studies | 18% ± 1% | |
alveolar macrophage | 3 studies | 33% ± 8% | |
respiratory goblet cell | 3 studies | 27% ± 12% | |
lymphocyte | 3 studies | 23% ± 7% | |
goblet cell | 3 studies | 40% ± 27% | |
mucus secreting cell | 3 studies | 27% ± 11% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
bladder | 100% | 2425.19 | 21 / 21 | 100% | 22.43 | 504 / 504 |
esophagus | 100% | 2315.78 | 1445 / 1445 | 100% | 31.53 | 183 / 183 |
lung | 100% | 2657.28 | 578 / 578 | 100% | 27.91 | 1155 / 1155 |
ovary | 100% | 3025.37 | 180 / 180 | 100% | 18.37 | 430 / 430 |
pancreas | 100% | 2115.22 | 328 / 328 | 100% | 20.76 | 178 / 178 |
prostate | 100% | 3450.46 | 245 / 245 | 100% | 43.29 | 502 / 502 |
uterus | 100% | 3248.24 | 170 / 170 | 100% | 21.36 | 459 / 459 |
brain | 100% | 1387.45 | 2637 / 2642 | 100% | 18.28 | 705 / 705 |
breast | 100% | 2817.06 | 459 / 459 | 100% | 29.44 | 1115 / 1118 |
stomach | 100% | 1979.96 | 359 / 359 | 100% | 23.36 | 285 / 286 |
liver | 100% | 1423.01 | 226 / 226 | 100% | 19.59 | 404 / 406 |
thymus | 100% | 2841.78 | 653 / 653 | 100% | 22.70 | 602 / 605 |
intestine | 100% | 2544.33 | 966 / 966 | 99% | 23.40 | 524 / 527 |
kidney | 100% | 2321.07 | 89 / 89 | 99% | 22.10 | 894 / 901 |
adrenal gland | 100% | 2368.55 | 258 / 258 | 98% | 19.71 | 226 / 230 |
skin | 100% | 2412.70 | 1809 / 1809 | 96% | 23.25 | 454 / 472 |
blood vessel | 100% | 2398.69 | 1335 / 1335 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 15.05 | 29 / 29 |
spleen | 100% | 2498.72 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 19.26 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 9.15 | 1 / 1 |
adipose | 100% | 2751.15 | 1203 / 1204 | 0% | 0 | 0 / 0 |
muscle | 100% | 1265.29 | 800 / 803 | 0% | 0 | 0 / 0 |
heart | 99% | 1308.52 | 854 / 861 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 85% | 11.49 | 68 / 80 |
peripheral blood | 81% | 1001.47 | 748 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0097719 | Biological process | neural tissue regeneration |
GO_0006941 | Biological process | striated muscle contraction |
GO_0060052 | Biological process | neurofilament cytoskeleton organization |
GO_0001701 | Biological process | in utero embryonic development |
GO_0006622 | Biological process | protein targeting to lysosome |
GO_0048515 | Biological process | spermatid differentiation |
GO_0061744 | Biological process | motor behavior |
GO_0007041 | Biological process | lysosomal transport |
GO_0071393 | Biological process | cellular response to progesterone stimulus |
GO_0006874 | Biological process | intracellular calcium ion homeostasis |
GO_0070493 | Biological process | thrombin-activated receptor signaling pathway |
GO_0034394 | Biological process | protein localization to cell surface |
GO_0007274 | Biological process | neuromuscular synaptic transmission |
GO_0048708 | Biological process | astrocyte differentiation |
GO_0010992 | Biological process | ubiquitin recycling |
GO_0048873 | Biological process | homeostasis of number of cells within a tissue |
GO_0007033 | Biological process | vacuole organization |
GO_0048812 | Biological process | neuron projection morphogenesis |
GO_0042147 | Biological process | retrograde transport, endosome to Golgi |
GO_0045047 | Biological process | protein targeting to ER |
GO_0030149 | Biological process | sphingolipid catabolic process |
GO_0007005 | Biological process | mitochondrion organization |
GO_0014004 | Biological process | microglia differentiation |
GO_0022904 | Biological process | respiratory electron transport chain |
GO_0046677 | Biological process | response to antibiotic |
GO_0051938 | Biological process | L-glutamate import |
GO_2000672 | Biological process | negative regulation of motor neuron apoptotic process |
GO_0097049 | Biological process | motor neuron apoptotic process |
GO_0006896 | Biological process | Golgi to vacuole transport |
GO_0051932 | Biological process | synaptic transmission, GABAergic |
GO_0090119 | Biological process | vesicle-mediated cholesterol transport |
GO_0010467 | Biological process | gene expression |
GO_0006309 | Biological process | apoptotic DNA fragmentation |
GO_0048630 | Biological process | skeletal muscle tissue growth |
GO_0050881 | Biological process | musculoskeletal movement |
GO_0150076 | Biological process | neuroinflammatory response |
GO_0051592 | Biological process | response to calcium ion |
GO_0040008 | Biological process | regulation of growth |
GO_0035128 | Biological process | post-embryonic forelimb morphogenesis |
GO_0035249 | Biological process | synaptic transmission, glutamatergic |
GO_0048471 | Cellular component | perinuclear region of cytoplasm |
GO_0016020 | Cellular component | membrane |
GO_0005739 | Cellular component | mitochondrion |
GO_0005654 | Cellular component | nucleoplasm |
GO_0005794 | Cellular component | Golgi apparatus |
GO_0032588 | Cellular component | trans-Golgi network membrane |
GO_0005802 | Cellular component | trans-Golgi network |
GO_0005829 | Cellular component | cytosol |
GO_0045202 | Cellular component | synapse |
GO_0000938 | Cellular component | GARP complex |
GO_0005515 | Molecular function | protein binding |
GO_0019905 | Molecular function | syntaxin binding |
Gene name | VPS54 |
Protein name | Vacuolar protein sorting-associated protein 54 (Hepatocellular carcinoma protein 8) (Tumor antigen HOM-HCC-8) (Tumor antigen SLP-8p) VPS54 subunit of GARP complex |
Synonyms | HCC8 |
Description | FUNCTION: Acts as a component of the GARP complex that is involved in retrograde transport from early and late endosomes to the trans-Golgi network (TGN). The GARP complex is required for the maintenance of the cycling of mannose 6-phosphate receptors between the TGN and endosomes, this cycling is necessary for proper lysosomal sorting of acid hydrolases such as CTSD . Within the GARP complex, required to tether the complex to the TGN. Not involved in endocytic recycling . . |
Accessions | ENST00000272322.9 [Q9P1Q0-1] A0A0A0MT48 ENST00000409558.8 [Q9P1Q0-4] ENST00000416400.1 ENST00000354504.7 [Q9P1Q0-3] Q9P1Q0 |