Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 13 studies | 26% ± 6% | |
astrocyte | 12 studies | 36% ± 16% | |
microglial cell | 10 studies | 32% ± 11% | |
oligodendrocyte precursor cell | 9 studies | 30% ± 12% | |
oligodendrocyte | 9 studies | 29% ± 12% | |
GABAergic neuron | 8 studies | 45% ± 23% | |
glutamatergic neuron | 8 studies | 48% ± 24% | |
fibroblast | 8 studies | 24% ± 5% | |
adipocyte | 6 studies | 32% ± 6% | |
macrophage | 6 studies | 27% ± 12% | |
mast cell | 5 studies | 22% ± 5% | |
B cell | 4 studies | 22% ± 4% | |
cardiac muscle cell | 4 studies | 38% ± 9% | |
epithelial cell | 4 studies | 25% ± 9% | |
Mueller cell | 4 studies | 28% ± 13% | |
amacrine cell | 4 studies | 25% ± 10% | |
retina horizontal cell | 4 studies | 28% ± 10% | |
retinal rod cell | 4 studies | 41% ± 11% | |
type I pneumocyte | 4 studies | 52% ± 6% | |
type II pneumocyte | 4 studies | 33% ± 5% | |
smooth muscle cell | 4 studies | 21% ± 3% | |
interneuron | 4 studies | 55% ± 20% | |
plasma cell | 3 studies | 28% ± 8% | |
CD4-positive, alpha-beta T cell | 3 studies | 21% ± 3% | |
glycinergic amacrine cell | 3 studies | 21% ± 2% | |
retinal cone cell | 3 studies | 33% ± 9% | |
T cell | 3 studies | 28% ± 9% | |
myeloid cell | 3 studies | 23% ± 4% | |
hepatocyte | 3 studies | 36% ± 13% | |
ependymal cell | 3 studies | 39% ± 16% | |
monocyte | 3 studies | 26% ± 5% | |
ciliated cell | 3 studies | 38% ± 15% | |
club cell | 3 studies | 39% ± 13% | |
endothelial cell of lymphatic vessel | 3 studies | 29% ± 10% | |
respiratory goblet cell | 3 studies | 38% ± 13% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
prostate | 100% | 1257.73 | 245 / 245 | 100% | 24.55 | 501 / 502 |
brain | 100% | 861.52 | 2638 / 2642 | 100% | 15.66 | 703 / 705 |
thymus | 100% | 1228.23 | 653 / 653 | 100% | 20.99 | 602 / 605 |
esophagus | 100% | 579.43 | 1444 / 1445 | 99% | 13.08 | 182 / 183 |
lung | 99% | 729.27 | 575 / 578 | 100% | 13.14 | 1152 / 1155 |
breast | 100% | 809.53 | 459 / 459 | 99% | 15.50 | 1106 / 1118 |
pancreas | 100% | 1051.21 | 328 / 328 | 99% | 11.57 | 176 / 178 |
adrenal gland | 100% | 1211.71 | 258 / 258 | 99% | 25.63 | 227 / 230 |
intestine | 100% | 762.81 | 966 / 966 | 98% | 13.33 | 519 / 527 |
bladder | 100% | 849.29 | 21 / 21 | 98% | 11.48 | 496 / 504 |
kidney | 100% | 1017.09 | 89 / 89 | 98% | 17.67 | 886 / 901 |
stomach | 100% | 1206.78 | 359 / 359 | 98% | 13.16 | 281 / 286 |
uterus | 100% | 783.36 | 170 / 170 | 97% | 10.01 | 447 / 459 |
liver | 100% | 499.51 | 226 / 226 | 96% | 9.54 | 390 / 406 |
skin | 100% | 618.56 | 1807 / 1809 | 96% | 14.51 | 451 / 472 |
ovary | 100% | 821.29 | 180 / 180 | 95% | 7.29 | 410 / 430 |
adipose | 100% | 694.36 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 971.07 | 1335 / 1335 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 12.09 | 29 / 29 |
spleen | 100% | 636.82 | 241 / 241 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 100% | 3.37 | 1 / 1 |
muscle | 100% | 672.79 | 801 / 803 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 98% | 8.55 | 44 / 45 |
heart | 95% | 530.44 | 822 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 86% | 393.29 | 796 / 929 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 74% | 5.77 | 59 / 80 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0005515 | Molecular function | protein binding |
Gene name | UMAD1 |
Protein name | UBAP1-MVB12-associated (UMA)-domain containing protein 1 (RPA3 antisense RNA 1) (RPA3 opposite strand) UBAP1-MVB12-associated (UMA) domain containing 1 |
Synonyms | RPA3OS RPA3-AS1 |
Description | |
Accessions | ENST00000639110.1 A0A1W2PNU7 C9J7I0 ENST00000639343.1 ENST00000463725.5 A0A1B0GUC2 A0A1W2PP33 ENST00000636849.1 A0A1B0GWD2 ENST00000682710.1 ENST00000638342.1 ENST00000482067.3 |