TTC39C report

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I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
T cell	24 studies	25% ± 9%	Explore
CD4-positive, alpha-beta T cell	23 studies	26% ± 9%	Explore
regulatory T cell	17 studies	30% ± 11%	Explore
CD8-positive, alpha-beta T cell	15 studies	21% ± 4%	Explore
mucosal invariant T cell	14 studies	33% ± 12%	Explore
naive thymus-derived CD4-positive, alpha-beta T cell	13 studies	27% ± 9%	Explore
natural killer cell	13 studies	20% ± 4%	Explore
ciliated cell	10 studies	29% ± 9%	Explore
CD8-positive, alpha-beta memory T cell	9 studies	24% ± 4%	Explore
glutamatergic neuron	9 studies	48% ± 20%	Explore
retinal rod cell	9 studies	52% ± 29%	Explore
adipocyte	9 studies	27% ± 7%	Explore
naive thymus-derived CD8-positive, alpha-beta T cell	8 studies	22% ± 7%	Explore
effector memory CD8-positive, alpha-beta T cell	8 studies	25% ± 7%	Explore
oligodendrocyte precursor cell	8 studies	26% ± 8%	Explore
CD4-positive, alpha-beta memory T cell	8 studies	25% ± 10%	Explore
gamma-delta T cell	8 studies	23% ± 3%	Explore
GABAergic neuron	7 studies	45% ± 15%	Explore
CD16-negative, CD56-bright natural killer cell, human	6 studies	24% ± 5%	Explore
interneuron	6 studies	36% ± 20%	Explore
fibroblast	6 studies	21% ± 3%	Explore
CD4-positive helper T cell	5 studies	22% ± 7%	Explore
neuron	5 studies	34% ± 14%	Explore
retinal cone cell	5 studies	36% ± 9%	Explore
effector memory CD4-positive, alpha-beta T cell	5 studies	35% ± 12%	Explore
hepatocyte	5 studies	52% ± 27%	Explore
mature NK T cell	5 studies	28% ± 11%	Explore
astrocyte	5 studies	25% ± 9%	Explore
epithelial cell	4 studies	29% ± 2%	Explore
retinal pigment epithelial cell	4 studies	36% ± 13%	Explore
lymphocyte	4 studies	47% ± 16%	Explore
innate lymphoid cell	4 studies	19% ± 3%	Explore
dendritic cell	4 studies	23% ± 12%	Explore
T follicular helper cell	4 studies	28% ± 8%	Explore
basal cell	4 studies	27% ± 11%	Explore
plasmacytoid dendritic cell	4 studies	26% ± 9%	Explore
leukocyte	3 studies	49% ± 13%	Explore
classical monocyte	3 studies	25% ± 5%	Explore
conventional dendritic cell	3 studies	26% ± 8%	Explore
endothelial cell	3 studies	39% ± 8%	Explore
GABAergic interneuron	3 studies	29% ± 6%	Explore
granule cell	3 studies	37% ± 23%	Explore
B cell	3 studies	18% ± 4%	Explore
cholangiocyte	3 studies	47% ± 19%	Explore
respiratory goblet cell	3 studies	21% ± 7%	Explore
monocyte	3 studies	20% ± 1%	Explore
group 3 innate lymphoid cell	3 studies	25% ± 6%	Explore
T-helper 17 cell	3 studies	37% ± 11%	Explore
effector memory CD8-positive, alpha-beta T cell, terminally differentiated	3 studies	23% ± 6%	Explore

II. Expression across tissues

sc-RNAseq dataData table

Name	Number of supported studies	Average coverage
brain	12 studies	30% ± 18%	Explore
peripheral blood	10 studies	22% ± 4%	Explore
eye	6 studies	43% ± 19%	Explore
lung	3 studies	22% ± 6%	Explore
liver	3 studies	27% ± 12%	Explore
adipose	3 studies	24% ± 4%	Explore

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
liver	100%	7155.19	226 / 226	100%	48.01	405 / 406
breast	100%	1322.88	459 / 459	98%	16.88	1099 / 1118
ovary	99%	678.19	179 / 180	98%	10.14	423 / 430
lung	99%	1031.60	574 / 578	98%	12.85	1127 / 1155
esophagus	100%	1014.49	1444 / 1445	96%	11.90	176 / 183
uterus	100%	1234.50	170 / 170	96%	10.25	441 / 459
pancreas	98%	788.29	323 / 328	96%	8.56	171 / 178
bladder	100%	952.71	21 / 21	89%	8.37	451 / 504
prostate	100%	1283.33	245 / 245	89%	7.16	449 / 502
adrenal gland	100%	2471.25	258 / 258	88%	7.76	203 / 230
stomach	100%	728.63	358 / 359	86%	5.91	246 / 286
intestine	99%	774.32	958 / 966	79%	4.78	417 / 527
skin	100%	2745.53	1808 / 1809	74%	6.73	348 / 472
brain	71%	402.51	1885 / 2642	70%	3.99	491 / 705
thymus	95%	524.66	621 / 653	38%	3.13	232 / 605
kidney	55%	287.44	49 / 89	60%	3.29	543 / 901
adipose	100%	1299.61	1204 / 1204	0%	0	0 / 0
spleen	100%	955.25	241 / 241	0%	0	0 / 0
tonsil	0%	0	0 / 0	100%	12.54	45 / 45
lymph node	0%	0	0 / 0	93%	9.32	27 / 29
peripheral blood	89%	1124.09	825 / 929	0%	0	0 / 0
blood vessel	76%	415.05	1013 / 1335	0%	0	0 / 0
eye	0%	0	0 / 0	51%	2.68	41 / 80
heart	49%	209.69	418 / 861	0%	0	0 / 0
muscle	3%	13.73	28 / 803	0%	0	0 / 0
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0
ureter	0%	0	0 / 0	0%	0	0 / 1