Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 35 studies | 49% ± 22% | |
fibroblast | 20 studies | 47% ± 23% | |
astrocyte | 19 studies | 63% ± 20% | |
microglial cell | 15 studies | 51% ± 18% | |
oligodendrocyte precursor cell | 14 studies | 59% ± 17% | |
smooth muscle cell | 12 studies | 49% ± 19% | |
oligodendrocyte | 12 studies | 37% ± 12% | |
GABAergic neuron | 11 studies | 65% ± 21% | |
pericyte | 11 studies | 50% ± 17% | |
glutamatergic neuron | 11 studies | 61% ± 22% | |
macrophage | 10 studies | 34% ± 18% | |
capillary endothelial cell | 9 studies | 31% ± 20% | |
endothelial cell of artery | 9 studies | 36% ± 22% | |
adipocyte | 9 studies | 51% ± 13% | |
mast cell | 9 studies | 33% ± 9% | |
endothelial cell of lymphatic vessel | 9 studies | 49% ± 18% | |
mesothelial cell | 8 studies | 52% ± 18% | |
epithelial cell | 7 studies | 31% ± 13% | |
neuron | 6 studies | 59% ± 25% | |
interneuron | 6 studies | 78% ± 11% | |
myeloid cell | 5 studies | 28% ± 7% | |
amacrine cell | 5 studies | 52% ± 20% | |
cardiac muscle cell | 5 studies | 43% ± 10% | |
vein endothelial cell | 5 studies | 54% ± 22% | |
type I pneumocyte | 5 studies | 26% ± 4% | |
type II pneumocyte | 5 studies | 52% ± 8% | |
Mueller cell | 4 studies | 60% ± 21% | |
retina horizontal cell | 4 studies | 49% ± 26% | |
retinal cone cell | 4 studies | 36% ± 11% | |
retinal ganglion cell | 4 studies | 49% ± 25% | |
retinal rod cell | 4 studies | 47% ± 14% | |
endothelial cell of vascular tree | 4 studies | 50% ± 20% | |
connective tissue cell | 4 studies | 43% ± 21% | |
club cell | 4 studies | 29% ± 7% | |
myofibroblast cell | 4 studies | 41% ± 25% | |
endothelial cell of sinusoid | 3 studies | 30% ± 11% | |
hepatic stellate cell | 3 studies | 48% ± 22% | |
differentiation-committed oligodendrocyte precursor | 3 studies | 54% ± 10% | |
GABAergic interneuron | 3 studies | 70% ± 3% | |
glial cell | 3 studies | 47% ± 23% | |
granule cell | 3 studies | 53% ± 14% | |
progenitor cell | 3 studies | 73% ± 16% | |
endocardial cell | 3 studies | 42% ± 19% | |
GABAergic amacrine cell | 3 studies | 70% ± 19% | |
glycinergic amacrine cell | 3 studies | 56% ± 17% | |
hepatocyte | 3 studies | 67% ± 20% | |
retinal pigment epithelial cell | 3 studies | 57% ± 25% | |
ependymal cell | 3 studies | 70% ± 11% | |
ciliated cell | 3 studies | 23% ± 4% | |
respiratory goblet cell | 3 studies | 28% ± 15% | |
muscle cell | 3 studies | 43% ± 25% | |
basal cell | 3 studies | 35% ± 9% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
ovary | 100% | 5529.66 | 180 / 180 | 99% | 12.74 | 427 / 430 |
thymus | 100% | 3310.32 | 653 / 653 | 99% | 10.11 | 598 / 605 |
kidney | 100% | 2079.88 | 89 / 89 | 98% | 14.86 | 883 / 901 |
adrenal gland | 100% | 2274.80 | 258 / 258 | 94% | 7.03 | 217 / 230 |
brain | 95% | 957.36 | 2503 / 2642 | 99% | 11.89 | 698 / 705 |
breast | 100% | 3173.97 | 459 / 459 | 93% | 6.53 | 1041 / 1118 |
prostate | 100% | 2714.78 | 245 / 245 | 91% | 5.30 | 455 / 502 |
pancreas | 97% | 908.49 | 318 / 328 | 93% | 5.52 | 165 / 178 |
lung | 100% | 3416.46 | 578 / 578 | 89% | 6.24 | 1029 / 1155 |
skin | 98% | 1685.31 | 1775 / 1809 | 91% | 8.21 | 429 / 472 |
esophagus | 99% | 2312.10 | 1435 / 1445 | 86% | 6.05 | 158 / 183 |
liver | 97% | 919.13 | 219 / 226 | 81% | 3.68 | 327 / 406 |
uterus | 100% | 4698.52 | 170 / 170 | 71% | 5.54 | 325 / 459 |
stomach | 100% | 1877.57 | 359 / 359 | 70% | 4.47 | 201 / 286 |
bladder | 100% | 2999.52 | 21 / 21 | 68% | 3.99 | 344 / 504 |
intestine | 100% | 2489.21 | 965 / 966 | 49% | 2.32 | 258 / 527 |
adipose | 100% | 3303.17 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 3141.90 | 1335 / 1335 | 0% | 0 | 0 / 0 |
spleen | 100% | 1518.43 | 241 / 241 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 100% | 5.84 | 1 / 1 |
eye | 0% | 0 | 0 / 0 | 99% | 8.70 | 79 / 80 |
heart | 99% | 1403.08 | 850 / 861 | 0% | 0 | 0 / 0 |
muscle | 97% | 966.11 | 779 / 803 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 73% | 4.19 | 33 / 45 |
lymph node | 0% | 0 | 0 / 0 | 55% | 2.13 | 16 / 29 |
peripheral blood | 1% | 3.86 | 6 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0051301 | Biological process | cell division |
GO_0007346 | Biological process | regulation of mitotic cell cycle |
GO_0005813 | Cellular component | centrosome |
GO_0030496 | Cellular component | midbody |
GO_0000922 | Cellular component | spindle pole |
GO_0005737 | Cellular component | cytoplasm |
GO_0019900 | Molecular function | kinase binding |
Gene name | TTC28 |
Protein name | Alternative protein TTC28 Tetratricopeptide repeat domain 28 Tetratricopeptide repeat protein 28 (TPR repeat protein 28) (TPR repeat-containing big gene cloned at Keio) |
Synonyms | KIAA1043 TPRBK |
Description | FUNCTION: During mitosis, may be involved in the condensation of spindle midzone microtubules, leading to the formation of midbody. . |
Accessions | B0QYP4 ENST00000442232.1 A0A087WW06 ENST00000431039.1 Q96AY4 ENST00000612946.4 B0QYP5 L8E8S5 ENST00000397906.7 |