Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 22 studies | 36% ± 14% | |
astrocyte | 18 studies | 40% ± 18% | |
oligodendrocyte | 15 studies | 40% ± 13% | |
oligodendrocyte precursor cell | 13 studies | 42% ± 16% | |
microglial cell | 13 studies | 43% ± 10% | |
glutamatergic neuron | 12 studies | 59% ± 24% | |
macrophage | 12 studies | 45% ± 19% | |
GABAergic neuron | 11 studies | 54% ± 22% | |
fibroblast | 11 studies | 33% ± 9% | |
pericyte | 9 studies | 33% ± 13% | |
epithelial cell | 9 studies | 36% ± 17% | |
adipocyte | 9 studies | 42% ± 8% | |
smooth muscle cell | 9 studies | 29% ± 10% | |
neuron | 7 studies | 48% ± 22% | |
endothelial cell of lymphatic vessel | 7 studies | 42% ± 10% | |
type I pneumocyte | 7 studies | 50% ± 21% | |
interneuron | 6 studies | 61% ± 17% | |
retinal ganglion cell | 6 studies | 41% ± 20% | |
retinal cone cell | 6 studies | 29% ± 11% | |
ciliated cell | 6 studies | 29% ± 10% | |
myeloid cell | 6 studies | 38% ± 13% | |
amacrine cell | 5 studies | 33% ± 11% | |
cardiac muscle cell | 5 studies | 45% ± 11% | |
retina horizontal cell | 5 studies | 36% ± 14% | |
monocyte | 5 studies | 35% ± 10% | |
club cell | 5 studies | 37% ± 14% | |
type II pneumocyte | 5 studies | 35% ± 5% | |
granule cell | 4 studies | 48% ± 12% | |
dendritic cell | 4 studies | 27% ± 2% | |
mesothelial cell | 4 studies | 28% ± 9% | |
Mueller cell | 4 studies | 35% ± 8% | |
retinal rod cell | 4 studies | 31% ± 5% | |
basal cell | 4 studies | 35% ± 18% | |
GABAergic interneuron | 3 studies | 51% ± 2% | |
progenitor cell | 3 studies | 29% ± 5% | |
plasma cell | 3 studies | 25% ± 8% | |
retinal bipolar neuron | 3 studies | 32% ± 13% | |
GABAergic amacrine cell | 3 studies | 46% ± 10% | |
OFF-bipolar cell | 3 studies | 29% ± 8% | |
ON-bipolar cell | 3 studies | 32% ± 10% | |
glycinergic amacrine cell | 3 studies | 34% ± 6% | |
rod bipolar cell | 3 studies | 39% ± 16% | |
endothelial cell of vascular tree | 3 studies | 29% ± 11% | |
hepatocyte | 3 studies | 47% ± 19% | |
ependymal cell | 3 studies | 45% ± 19% | |
T cell | 3 studies | 29% ± 8% | |
alveolar macrophage | 3 studies | 47% ± 8% | |
capillary endothelial cell | 3 studies | 27% ± 6% | |
respiratory goblet cell | 3 studies | 42% ± 16% | |
goblet cell | 3 studies | 45% ± 26% | |
mast cell | 3 studies | 27% ± 11% | |
epithelial cell of proximal tubule | 3 studies | 19% ± 5% | |
mucus secreting cell | 3 studies | 32% ± 8% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
lung | 100% | 1846.45 | 578 / 578 | 100% | 18.48 | 1153 / 1155 |
brain | 100% | 2156.05 | 2641 / 2642 | 100% | 27.41 | 704 / 705 |
prostate | 100% | 2025.56 | 245 / 245 | 100% | 20.21 | 501 / 502 |
ovary | 100% | 1807.53 | 180 / 180 | 100% | 15.36 | 429 / 430 |
breast | 100% | 2060.95 | 459 / 459 | 100% | 24.10 | 1115 / 1118 |
esophagus | 100% | 1763.24 | 1445 / 1445 | 99% | 17.79 | 182 / 183 |
bladder | 100% | 2090.67 | 21 / 21 | 99% | 17.25 | 501 / 504 |
uterus | 100% | 1876.29 | 170 / 170 | 99% | 18.58 | 453 / 459 |
thymus | 100% | 1761.52 | 653 / 653 | 99% | 15.41 | 597 / 605 |
intestine | 100% | 1649.09 | 966 / 966 | 99% | 13.39 | 520 / 527 |
stomach | 100% | 1013.81 | 359 / 359 | 98% | 12.89 | 281 / 286 |
pancreas | 99% | 797.85 | 325 / 328 | 99% | 16.40 | 176 / 178 |
kidney | 100% | 1341.08 | 89 / 89 | 97% | 30.26 | 874 / 901 |
liver | 100% | 2143.74 | 226 / 226 | 95% | 14.85 | 385 / 406 |
skin | 100% | 1845.81 | 1809 / 1809 | 94% | 10.04 | 442 / 472 |
adrenal gland | 100% | 1717.78 | 258 / 258 | 88% | 8.54 | 203 / 230 |
adipose | 100% | 1959.28 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 1852.60 | 1335 / 1335 | 0% | 0 | 0 / 0 |
muscle | 100% | 3103.08 | 803 / 803 | 0% | 0 | 0 / 0 |
spleen | 100% | 1435.32 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 18.34 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 12.30 | 1 / 1 |
heart | 97% | 1448.90 | 838 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 97% | 1193.06 | 900 / 929 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 90% | 7.61 | 26 / 29 |
eye | 0% | 0 | 0 / 0 | 71% | 5.54 | 57 / 80 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0007029 | Biological process | endoplasmic reticulum organization |
GO_0097750 | Biological process | endosome membrane tubulation |
GO_0016197 | Biological process | endosomal transport |
GO_0140285 | Biological process | endosome fission |
GO_0090148 | Biological process | membrane fission |
GO_0140284 | Cellular component | endoplasmic reticulum-endosome membrane contact site |
GO_0005791 | Cellular component | rough endoplasmic reticulum |
GO_0005829 | Cellular component | cytosol |
GO_0012505 | Cellular component | endomembrane system |
GO_0005789 | Cellular component | endoplasmic reticulum membrane |
GO_0042802 | Molecular function | identical protein binding |
GO_0005515 | Molecular function | protein binding |
Gene name | TMCC1 |
Protein name | Transmembrane and coiled-coil domains protein 1 Transmembrane and coiled-coil domain family 1 TMCC1 protein Transmembrane and coiled-coil domain family 1 (cDNA FLJ42680 fis, clone BRAMY2040592, highly similar to Transmembrane and coiled-coil domains protein 1) |
Synonyms | DKFZp686H13261 KIAA0779 |
Description | FUNCTION: Endoplasmic reticulum membrane protein that promotes endoplasmic reticulum-associated endosome fission . Localizes to contact sites between the endoplasmic reticulum and endosomes and acts by promoting recruitment of the endoplasmic reticulum to endosome tubules for fission . Endosome membrane fission of early and late endosomes is essential to separate regions destined for lysosomal degradation from carriers to be recycled to the plasma membrane . . |
Accessions | ENST00000432054.6 A0A8V8TLJ9 ENST00000505616.5 D6RH19 ENST00000510323.1 ENST00000648771.1 ENST00000393238.8 [O94876-1] D6RBT7 ENST00000426664.6 ENST00000698215.1 [O94876-2] ENST00000698214.1 Q8N4H2 Q6N039 E9PC87 O94876 |