TBCC report

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I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
natural killer cell	21 studies	21% ± 5%	Explore
CD4-positive, alpha-beta T cell	13 studies	21% ± 6%	Explore
CD8-positive, alpha-beta T cell	13 studies	23% ± 6%	Explore
regulatory T cell	13 studies	22% ± 7%	Explore
naive thymus-derived CD8-positive, alpha-beta T cell	10 studies	22% ± 6%	Explore
gamma-delta T cell	10 studies	24% ± 6%	Explore
CD16-negative, CD56-bright natural killer cell, human	9 studies	24% ± 4%	Explore
CD16-positive, CD56-dim natural killer cell, human	9 studies	25% ± 4%	Explore
T cell	9 studies	19% ± 4%	Explore
mature NK T cell	8 studies	22% ± 2%	Explore
plasmacytoid dendritic cell	8 studies	22% ± 6%	Explore
CD8-positive, alpha-beta memory T cell	7 studies	26% ± 6%	Explore
mucosal invariant T cell	7 studies	19% ± 2%	Explore
effector memory CD8-positive, alpha-beta T cell	6 studies	24% ± 5%	Explore
naive thymus-derived CD4-positive, alpha-beta T cell	5 studies	21% ± 4%	Explore
B cell	4 studies	19% ± 2%	Explore
epithelial cell	4 studies	30% ± 10%	Explore
innate lymphoid cell	4 studies	19% ± 4%	Explore
CD4-positive, alpha-beta memory T cell	4 studies	25% ± 7%	Explore
pancreatic A cell	3 studies	28% ± 6%	Explore
type B pancreatic cell	3 studies	35% ± 8%	Explore
retinal cone cell	3 studies	37% ± 12%	Explore
effector memory CD4-positive, alpha-beta T cell	3 studies	25% ± 6%	Explore
T follicular helper cell	3 studies	25% ± 2%	Explore
double negative thymocyte	3 studies	25% ± 7%	Explore

II. Expression across tissues

sc-RNAseq dataData table

Name	Number of supported studies	Average coverage
peripheral blood	5 studies	24% ± 9%	Explore
pancreas	3 studies	28% ± 4%	Explore

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
esophagus	100%	1061.94	1445 / 1445	100%	43.23	183 / 183
breast	100%	762.41	459 / 459	100%	59.05	1117 / 1118
skin	100%	1154.87	1807 / 1809	100%	61.92	472 / 472
thymus	100%	945.12	652 / 653	100%	58.83	605 / 605
prostate	100%	788.86	245 / 245	100%	49.03	501 / 502
uterus	100%	837.31	170 / 170	100%	61.32	458 / 459
stomach	100%	884.61	358 / 359	100%	43.78	286 / 286
adrenal gland	100%	1054.57	258 / 258	100%	59.71	229 / 230
kidney	100%	675.49	89 / 89	100%	35.19	897 / 901
liver	100%	492.22	226 / 226	100%	33.67	404 / 406
bladder	100%	834.62	21 / 21	99%	50.61	501 / 504
brain	99%	961.84	2625 / 2642	100%	49.60	705 / 705
intestine	100%	1238.50	966 / 966	99%	46.59	523 / 527
lung	98%	791.33	569 / 578	100%	50.73	1155 / 1155
ovary	98%	607.19	177 / 180	100%	76.36	430 / 430
pancreas	98%	570.93	322 / 328	100%	45.36	178 / 178
eye	0%	0	0 / 0	100%	62.08	80 / 80
lymph node	0%	0	0 / 0	100%	102.12	29 / 29
spleen	100%	2144.52	241 / 241	0%	0	0 / 0
tonsil	0%	0	0 / 0	100%	55.88	45 / 45
ureter	0%	0	0 / 0	100%	35.72	1 / 1
muscle	100%	1117.62	799 / 803	0%	0	0 / 0
adipose	100%	734.82	1198 / 1204	0%	0	0 / 0
blood vessel	99%	785.89	1322 / 1335	0%	0	0 / 0
peripheral blood	97%	1386.55	897 / 929	0%	0	0 / 0
heart	93%	487.40	802 / 861	0%	0	0 / 0
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0