Name | Number of supported studies | Average coverage | |
---|---|---|---|
glutamatergic neuron | 12 studies | 93% ± 9% | |
neuron | 11 studies | 75% ± 21% | |
microglial cell | 11 studies | 46% ± 18% | |
astrocyte | 11 studies | 42% ± 20% | |
GABAergic neuron | 10 studies | 79% ± 22% | |
retinal cone cell | 9 studies | 94% ± 5% | |
retinal rod cell | 9 studies | 86% ± 12% | |
oligodendrocyte | 9 studies | 41% ± 21% | |
amacrine cell | 8 studies | 93% ± 6% | |
retinal ganglion cell | 8 studies | 85% ± 24% | |
interneuron | 7 studies | 78% ± 17% | |
endothelial cell | 6 studies | 59% ± 17% | |
macrophage | 6 studies | 28% ± 10% | |
oligodendrocyte precursor cell | 6 studies | 41% ± 14% | |
Mueller cell | 6 studies | 68% ± 21% | |
endothelial cell of lymphatic vessel | 6 studies | 34% ± 12% | |
retinal bipolar neuron | 5 studies | 94% ± 6% | |
OFF-bipolar cell | 5 studies | 97% ± 3% | |
ON-bipolar cell | 5 studies | 96% ± 5% | |
retina horizontal cell | 5 studies | 50% ± 18% | |
granule cell | 4 studies | 87% ± 13% | |
GABAergic amacrine cell | 4 studies | 98% ± 1% | |
glycinergic amacrine cell | 4 studies | 93% ± 2% | |
myofibroblast cell | 4 studies | 25% ± 7% | |
type I pneumocyte | 4 studies | 25% ± 8% | |
progenitor cell | 3 studies | 47% ± 10% | |
abnormal cell | 3 studies | 21% ± 8% | |
GABAergic interneuron | 3 studies | 75% ± 27% | |
neuroendocrine cell | 3 studies | 83% ± 1% | |
rod bipolar cell | 3 studies | 96% ± 1% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
brain | 92% | 24179.15 | 2432 / 2642 | 90% | 77.21 | 631 / 705 |
ureter | 0% | 0 | 0 / 0 | 100% | 3.83 | 1 / 1 |
uterus | 57% | 1801.75 | 97 / 170 | 27% | 3.06 | 124 / 459 |
prostate | 24% | 402.12 | 59 / 245 | 58% | 7.87 | 291 / 502 |
adrenal gland | 12% | 328.17 | 31 / 258 | 68% | 126.15 | 157 / 230 |
esophagus | 5% | 83.30 | 78 / 1445 | 60% | 5.78 | 110 / 183 |
intestine | 25% | 405.68 | 242 / 966 | 34% | 2.36 | 180 / 527 |
bladder | 5% | 65.33 | 1 / 21 | 48% | 5.37 | 244 / 504 |
lung | 0% | 0 | 0 / 578 | 50% | 5.52 | 583 / 1155 |
breast | 0% | 0 | 0 / 459 | 50% | 22.98 | 560 / 1118 |
thymus | 0% | 0 | 0 / 653 | 41% | 5.10 | 249 / 605 |
stomach | 6% | 104.51 | 23 / 359 | 32% | 2.41 | 91 / 286 |
ovary | 19% | 318.84 | 34 / 180 | 15% | 1.02 | 65 / 430 |
pancreas | 0% | 0 | 0 / 328 | 25% | 2.64 | 45 / 178 |
liver | 0% | 0 | 0 / 226 | 22% | 1.75 | 90 / 406 |
tonsil | 0% | 0 | 0 / 0 | 18% | 1.09 | 8 / 45 |
skin | 0% | 2.76 | 3 / 1809 | 11% | 1.38 | 50 / 472 |
eye | 0% | 0 | 0 / 0 | 6% | 2.37 | 5 / 80 |
kidney | 2% | 56.82 | 2 / 89 | 3% | 0.36 | 28 / 901 |
lymph node | 0% | 0 | 0 / 0 | 3% | 0.17 | 1 / 29 |
spleen | 0% | 4.74 | 1 / 241 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
adipose | 0% | 0 | 0 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 0% | 0 | 0 / 1335 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
heart | 0% | 0 | 0 / 861 | 0% | 0 | 0 / 0 |
muscle | 0% | 0 | 0 / 803 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
peripheral blood | 0% | 0 | 0 / 929 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0033603 | Biological process | positive regulation of dopamine secretion |
GO_0048791 | Biological process | calcium ion-regulated exocytosis of neurotransmitter |
GO_0099502 | Biological process | calcium-dependent activation of synaptic vesicle fusion |
GO_0007269 | Biological process | neurotransmitter secretion |
GO_0098746 | Biological process | fast, calcium ion-dependent exocytosis of neurotransmitter |
GO_0048488 | Biological process | synaptic vesicle endocytosis |
GO_0017157 | Biological process | regulation of exocytosis |
GO_0071911 | Biological process | synchronous neurotransmitter secretion |
GO_1903861 | Biological process | positive regulation of dendrite extension |
GO_0051966 | Biological process | regulation of synaptic transmission, glutamatergic |
GO_1903305 | Biological process | regulation of regulated secretory pathway |
GO_0071277 | Biological process | cellular response to calcium ion |
GO_1903235 | Biological process | positive regulation of calcium ion-dependent exocytosis of neurotransmitter |
GO_0030154 | Biological process | cell differentiation |
GO_0007268 | Biological process | chemical synaptic transmission |
GO_0048278 | Biological process | vesicle docking |
GO_0051291 | Biological process | protein heterooligomerization |
GO_0050806 | Biological process | positive regulation of synaptic transmission |
GO_0061669 | Biological process | spontaneous neurotransmitter secretion |
GO_0005513 | Biological process | detection of calcium ion |
GO_0070382 | Cellular component | exocytic vesicle |
GO_0098978 | Cellular component | glutamatergic synapse |
GO_0060201 | Cellular component | clathrin-sculpted acetylcholine transport vesicle membrane |
GO_0060203 | Cellular component | clathrin-sculpted glutamate transport vesicle membrane |
GO_0061202 | Cellular component | clathrin-sculpted gamma-aminobutyric acid transport vesicle membrane |
GO_0005886 | Cellular component | plasma membrane |
GO_0030672 | Cellular component | synaptic vesicle membrane |
GO_0042584 | Cellular component | chromaffin granule membrane |
GO_0030669 | Cellular component | clathrin-coated endocytic vesicle membrane |
GO_0005794 | Cellular component | Golgi apparatus |
GO_0098686 | Cellular component | hippocampal mossy fiber to CA3 synapse |
GO_0043005 | Cellular component | neuron projection |
GO_0042734 | Cellular component | presynaptic membrane |
GO_0008021 | Cellular component | synaptic vesicle |
GO_0031045 | Cellular component | dense core granule |
GO_0070083 | Cellular component | clathrin-sculpted monoamine transport vesicle membrane |
GO_0005737 | Cellular component | cytoplasm |
GO_0060076 | Cellular component | excitatory synapse |
GO_0030424 | Cellular component | axon |
GO_0044306 | Cellular component | neuron projection terminus |
GO_0061891 | Molecular function | calcium ion sensor activity |
GO_0005544 | Molecular function | calcium-dependent phospholipid binding |
GO_0005546 | Molecular function | phosphatidylinositol-4,5-bisphosphate binding |
GO_0001786 | Molecular function | phosphatidylserine binding |
GO_0042802 | Molecular function | identical protein binding |
GO_0017075 | Molecular function | syntaxin-1 binding |
GO_0050750 | Molecular function | low-density lipoprotein particle receptor binding |
GO_0048306 | Molecular function | calcium-dependent protein binding |
GO_0000149 | Molecular function | SNARE binding |
GO_0030276 | Molecular function | clathrin binding |
GO_0046982 | Molecular function | protein heterodimerization activity |
GO_0030348 | Molecular function | syntaxin-3 binding |
GO_0005516 | Molecular function | calmodulin binding |
GO_0005509 | Molecular function | calcium ion binding |
GO_0005515 | Molecular function | protein binding |
Gene name | SYT1 |
Protein name | Synaptotagmin 1 Synaptotagmin Synaptotagmin-1 (Synaptotagmin I) (SytI) (p65) |
Synonyms | SYT hCG_2016754 SVP65 |
Description | FUNCTION: Calcium sensor that participates in triggering neurotransmitter release at the synapse (By similarity). May have a regulatory role in the membrane interactions during trafficking of synaptic vesicles at the active zone of the synapse (By similarity). It binds acidic phospholipids with a specificity that requires the presence of both an acidic head group and a diacyl backbone. A Ca(2+)-dependent interaction between synaptotagmin and putative receptors for activated protein kinase C has also been reported. It can bind to at least three additional proteins in a Ca(2+)-independent manner; these are neurexins, syntaxin and AP2. Plays a role in dendrite formation by melanocytes . . FUNCTION: May have a regulatory role in the membrane interactions during trafficking of synaptic vesicles at the active zone of the synapse. It binds acidic phospholipids with a specificity that requires the presence of both an acidic head group and a diacyl backbone. . FUNCTION: May have a regulatory role in the membrane interactions during trafficking of synaptic vesicles at the active zone of the synapse. It binds acidic phospholipids with a specificity that requires the presence of both an acidic head group and a diacyl backbone. . FUNCTION: May have a regulatory role in the membrane interactions during trafficking of synaptic vesicles at the active zone of the synapse. It binds acidic phospholipids with a specificity that requires the presence of both an acidic head group and a diacyl backbone. . FUNCTION: May have a regulatory role in the membrane interactions during trafficking of synaptic vesicles at the active zone of the synapse. It binds acidic phospholipids with a specificity that requires the presence of both an acidic head group and a diacyl backbone. . FUNCTION: May have a regulatory role in the membrane interactions during trafficking of synaptic vesicles at the active zone of the synapse. It binds acidic phospholipids with a specificity that requires the presence of both an acidic head group and a diacyl backbone. . FUNCTION: May have a regulatory role in the membrane interactions during trafficking of synaptic vesicles at the active zone of the synapse. It binds acidic phospholipids with a specificity that requires the presence of both an acidic head group and a diacyl backbone. . FUNCTION: May have a regulatory role in the membrane interactions during trafficking of synaptic vesicles at the active zone of the synapse. It binds acidic phospholipids with a specificity that requires the presence of both an acidic head group and a diacyl backbone. . FUNCTION: May have a regulatory role in the membrane interactions during trafficking of synaptic vesicles at the active zone of the synapse. It binds acidic phospholipids with a specificity that requires the presence of both an acidic head group and a diacyl backbone. . |
Accessions | F8W1U9 ENST00000549671.5 ENST00000704719.1 ENST00000552744.5 A0A994J776 ENST00000457153.6 ENST00000261205.9 ENST00000704696.1 C9JX50 J3KQA0 ENST00000547046.5 ENST00000551304.5 ENST00000704698.1 ENST00000446242.3 A0A994J5A7 ENST00000704718.1 A0A994J4V4 P21579 ENST00000704711.1 ENST00000704707.1 ENST00000704700.1 ENST00000704710.1 ENST00000704703.1 A0A994J4M1 ENST00000704699.1 ENST00000704716.1 ENST00000704708.1 ENST00000704715.1 ENST00000552074.5 ENST00000704705.1 F8VYH8 ENST00000704709.1 A0A994J4M5 ENST00000393240.7 A0A994J7L5 A0A994J4V0 F8VZY3 ENST00000704717.1 ENST00000704706.1 ENST00000704704.1 ENST00000704714.1 F8VXH0 ENST00000552624.5 ENST00000704697.1 ENST00000704701.1 A0A994J784 ENST00000704702.1 |