Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 48 studies | 68% ± 21% | |
fibroblast | 44 studies | 62% ± 24% | |
pericyte | 39 studies | 72% ± 22% | |
smooth muscle cell | 34 studies | 81% ± 16% | |
astrocyte | 23 studies | 72% ± 18% | |
connective tissue cell | 18 studies | 57% ± 26% | |
capillary endothelial cell | 18 studies | 72% ± 15% | |
endothelial cell of artery | 16 studies | 74% ± 17% | |
vein endothelial cell | 16 studies | 74% ± 20% | |
myofibroblast cell | 15 studies | 81% ± 17% | |
endothelial cell of vascular tree | 15 studies | 86% ± 15% | |
oligodendrocyte precursor cell | 12 studies | 46% ± 19% | |
basal cell | 10 studies | 30% ± 26% | |
GABAergic neuron | 10 studies | 41% ± 22% | |
glutamatergic neuron | 10 studies | 62% ± 26% | |
microglial cell | 7 studies | 40% ± 24% | |
epithelial cell | 6 studies | 27% ± 13% | |
oligodendrocyte | 6 studies | 31% ± 16% | |
glial cell | 5 studies | 53% ± 23% | |
retinal ganglion cell | 5 studies | 52% ± 14% | |
adventitial cell | 5 studies | 74% ± 26% | |
adipocyte | 5 studies | 32% ± 12% | |
neuron | 4 studies | 40% ± 22% | |
muscle cell | 4 studies | 57% ± 22% | |
Schwann cell | 4 studies | 33% ± 11% | |
secretory cell | 4 studies | 46% ± 19% | |
macrophage | 3 studies | 30% ± 7% | |
renal alpha-intercalated cell | 3 studies | 31% ± 7% | |
abnormal cell | 3 studies | 37% ± 14% | |
retinal pigment epithelial cell | 3 studies | 27% ± 8% | |
endocardial cell | 3 studies | 51% ± 12% | |
Mueller cell | 3 studies | 28% ± 12% | |
mesothelial cell | 3 studies | 31% ± 10% | |
ependymal cell | 3 studies | 41% ± 12% | |
interneuron | 3 studies | 48% ± 22% | |
myoepithelial cell | 3 studies | 59% ± 22% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 15 studies | 43% ± 23% | |
lung | 11 studies | 29% ± 17% | |
heart | 7 studies | 37% ± 6% | |
intestine | 5 studies | 38% ± 13% | |
uterus | 5 studies | 49% ± 17% | |
breast | 4 studies | 32% ± 9% | |
prostate | 4 studies | 24% ± 6% | |
adipose | 3 studies | 22% ± 7% | |
esophagus | 3 studies | 32% ± 3% | |
eye | 3 studies | 25% ± 3% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
brain | 91% | 84567.11 | 2399 / 2642 | 100% | 3097.37 | 702 / 705 |
prostate | 93% | 54850.97 | 229 / 245 | 94% | 391.40 | 473 / 502 |
breast | 100% | 74031.98 | 458 / 459 | 83% | 277.50 | 933 / 1118 |
thymus | 99% | 54687.67 | 649 / 653 | 77% | 218.57 | 464 / 605 |
lung | 98% | 67680.49 | 566 / 578 | 66% | 178.58 | 762 / 1155 |
uterus | 99% | 135879.48 | 169 / 170 | 37% | 166.37 | 170 / 459 |
bladder | 100% | 67432.62 | 21 / 21 | 30% | 70.72 | 150 / 504 |
esophagus | 78% | 76302.40 | 1120 / 1445 | 50% | 128.30 | 91 / 183 |
intestine | 85% | 59271.99 | 819 / 966 | 30% | 71.80 | 156 / 527 |
ovary | 84% | 36654.76 | 151 / 180 | 23% | 36.14 | 100 / 430 |
adipose | 100% | 97542.43 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 195034.93 | 1335 / 1335 | 0% | 0 | 0 / 0 |
stomach | 58% | 38537.59 | 207 / 359 | 40% | 161.87 | 115 / 286 |
heart | 98% | 51136.03 | 840 / 861 | 0% | 0 | 0 / 0 |
pancreas | 5% | 1100.24 | 16 / 328 | 86% | 271.04 | 153 / 178 |
adrenal gland | 16% | 3246.77 | 40 / 258 | 68% | 174.21 | 156 / 230 |
kidney | 16% | 3855.02 | 14 / 89 | 64% | 424.56 | 573 / 901 |
muscle | 60% | 14929.49 | 478 / 803 | 0% | 0 | 0 / 0 |
skin | 28% | 7342.22 | 512 / 1809 | 31% | 128.98 | 145 / 472 |
spleen | 26% | 6256.69 | 63 / 241 | 0% | 0 | 0 / 0 |
liver | 0% | 0 | 0 / 226 | 24% | 102.33 | 98 / 406 |
tonsil | 0% | 0 | 0 / 0 | 22% | 34.13 | 10 / 45 |
lymph node | 0% | 0 | 0 / 0 | 21% | 24.15 | 6 / 29 |
eye | 0% | 0 | 0 / 0 | 13% | 31.23 | 10 / 80 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
peripheral blood | 0% | 0 | 0 / 929 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0007165 | Biological process | signal transduction |
GO_0099560 | Biological process | synaptic membrane adhesion |
GO_0048856 | Biological process | anatomical structure development |
GO_0098978 | Cellular component | glutamatergic synapse |
GO_0005615 | Cellular component | extracellular space |
GO_0005788 | Cellular component | endoplasmic reticulum lumen |
GO_0005576 | Cellular component | extracellular region |
GO_0062023 | Cellular component | collagen-containing extracellular matrix |
GO_0050840 | Molecular function | extracellular matrix binding |
GO_0005509 | Molecular function | calcium ion binding |
GO_0005518 | Molecular function | collagen binding |
GO_0005515 | Molecular function | protein binding |
Gene name | SPARCL1 |
Protein name | SPARC-like protein 1 SPARC like 1 SPARC-like protein 1 (High endothelial venule protein) (Hevin) (MAST 9) |
Synonyms | PIG33 |
Description | |
Accessions | ENST00000512317.5 F5H1Y9 F5H4Y3 E7EU82 Q8N4S1 ENST00000458304.2 ENST00000503414.5 [Q14515-2] ENST00000535835.5 Q14515 ENST00000541496.1 C9JJR8 ENST00000418378.5 [Q14515-1] D6RA29 F5H331 ENST00000282470.11 [Q14515-1] ENST00000543631.5 ENST00000434434.5 E9PC64 ENST00000509407.5 |