Name | Number of supported studies | Average coverage | |
---|---|---|---|
ciliated cell | 16 studies | 74% ± 15% | |
epithelial cell | 15 studies | 46% ± 23% | |
goblet cell | 12 studies | 56% ± 24% | |
secretory cell | 9 studies | 29% ± 10% | |
enterocyte | 7 studies | 61% ± 26% | |
club cell | 6 studies | 32% ± 12% | |
respiratory goblet cell | 6 studies | 30% ± 8% | |
basal cell | 6 studies | 31% ± 12% | |
brush cell | 5 studies | 37% ± 13% | |
deuterosomal cell | 4 studies | 48% ± 17% | |
transit amplifying cell | 4 studies | 66% ± 25% | |
type II pneumocyte | 4 studies | 37% ± 22% | |
luminal hormone-sensing cell of mammary gland | 4 studies | 47% ± 14% | |
duct epithelial cell | 3 studies | 43% ± 4% | |
ionocyte | 3 studies | 38% ± 3% | |
squamous epithelial cell | 3 studies | 45% ± 26% | |
intestinal crypt stem cell | 3 studies | 67% ± 18% | |
neuroendocrine cell | 3 studies | 49% ± 19% | |
progenitor cell | 3 studies | 72% ± 19% | |
mucus secreting cell | 3 studies | 67% ± 32% | |
enteroendocrine cell | 3 studies | 66% ± 25% | |
abnormal cell | 3 studies | 32% ± 11% | |
progenitor cell of mammary luminal epithelium | 3 studies | 18% ± 2% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
pancreas | 100% | 453.25 | 328 / 328 | 94% | 32.56 | 168 / 178 |
stomach | 79% | 785.57 | 282 / 359 | 94% | 42.47 | 269 / 286 |
prostate | 88% | 244.36 | 215 / 245 | 75% | 24.29 | 374 / 502 |
intestine | 56% | 608.20 | 538 / 966 | 97% | 53.58 | 510 / 527 |
bladder | 62% | 245.38 | 13 / 21 | 85% | 40.02 | 427 / 504 |
breast | 59% | 194.41 | 269 / 459 | 86% | 31.28 | 962 / 1118 |
lung | 78% | 139.23 | 453 / 578 | 62% | 16.32 | 721 / 1155 |
kidney | 93% | 127.44 | 83 / 89 | 6% | 1.20 | 51 / 901 |
ovary | 1% | 0.62 | 2 / 180 | 93% | 41.88 | 402 / 430 |
uterus | 12% | 22.32 | 20 / 170 | 66% | 21.36 | 305 / 459 |
esophagus | 19% | 16.21 | 277 / 1445 | 58% | 13.29 | 107 / 183 |
tonsil | 0% | 0 | 0 / 0 | 42% | 5.98 | 19 / 45 |
skin | 40% | 31.06 | 715 / 1809 | 0% | 0.01 | 1 / 472 |
brain | 22% | 16.98 | 574 / 2642 | 0% | 0 | 0 / 705 |
liver | 0% | 0 | 0 / 226 | 9% | 2.77 | 37 / 406 |
thymus | 1% | 0.76 | 9 / 653 | 4% | 0.80 | 26 / 605 |
lymph node | 0% | 0 | 0 / 0 | 3% | 0.27 | 1 / 29 |
adrenal gland | 1% | 0.53 | 2 / 258 | 1% | 0.18 | 3 / 230 |
adipose | 1% | 1.09 | 9 / 1204 | 0% | 0 | 0 / 0 |
peripheral blood | 1% | 1.12 | 6 / 929 | 0% | 0 | 0 / 0 |
heart | 0% | 0.28 | 3 / 861 | 0% | 0 | 0 / 0 |
blood vessel | 0% | 0.13 | 2 / 1335 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 80 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
muscle | 0% | 0 | 0 / 803 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spleen | 0% | 0 | 0 / 241 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0032956 | Biological process | regulation of actin cytoskeleton organization |
GO_0140042 | Biological process | lipid droplet formation |
GO_0030335 | Biological process | positive regulation of cell migration |
GO_0042127 | Biological process | regulation of cell population proliferation |
GO_0051726 | Biological process | regulation of cell cycle |
GO_0005770 | Cellular component | late endosome |
GO_0016020 | Cellular component | membrane |
GO_0005515 | Molecular function | protein binding |
Gene name | SMIM22 |
Protein name | Small integral membrane protein 22 Small integral membrane protein 22 (Cancer-associated small integral membrane open reading frame 1) |
Synonyms | CASIMO1 |
Description | FUNCTION: May modulate lipid droplet formation throught interaction with SQLE. . |
Accessions | ENST00000615889.4 [K7EJ46-2] ENST00000586005.6 [K7EJ46-2] A0A4V7I672 ENST00000589721.5 [K7EJ46-3] ENST00000588606.5 [K7EJ46-3] ENST00000615471.4 ENST00000591870.1 [K7EJ46-3] ENST00000589327.5 [K7EJ46-2] K7EJ46 ENST00000586440.1 [K7EJ46-2] |