Name | Number of supported studies | Average coverage | |
---|---|---|---|
fibroblast | 23 studies | 36% ± 19% | |
endothelial cell | 20 studies | 32% ± 17% | |
astrocyte | 14 studies | 34% ± 18% | |
glutamatergic neuron | 13 studies | 63% ± 22% | |
B cell | 12 studies | 32% ± 15% | |
smooth muscle cell | 12 studies | 38% ± 13% | |
pericyte | 12 studies | 39% ± 19% | |
microglial cell | 12 studies | 37% ± 13% | |
oligodendrocyte precursor cell | 12 studies | 41% ± 12% | |
GABAergic neuron | 11 studies | 63% ± 26% | |
interneuron | 7 studies | 68% ± 24% | |
adipocyte | 7 studies | 25% ± 5% | |
neuron | 6 studies | 56% ± 25% | |
endothelial cell of lymphatic vessel | 6 studies | 26% ± 7% | |
ciliated cell | 5 studies | 29% ± 13% | |
oligodendrocyte | 5 studies | 32% ± 14% | |
hepatocyte | 4 studies | 65% ± 26% | |
granule cell | 4 studies | 54% ± 9% | |
plasma cell | 4 studies | 30% ± 6% | |
retinal rod cell | 4 studies | 24% ± 4% | |
connective tissue cell | 4 studies | 25% ± 8% | |
myofibroblast cell | 4 studies | 34% ± 17% | |
mesothelial cell | 4 studies | 45% ± 18% | |
hepatic stellate cell | 3 studies | 44% ± 17% | |
GABAergic interneuron | 3 studies | 75% ± 1% | |
epithelial cell | 3 studies | 38% ± 13% | |
macrophage | 3 studies | 37% ± 22% | |
progenitor cell | 3 studies | 74% ± 15% | |
amacrine cell | 3 studies | 25% ± 4% | |
glycinergic amacrine cell | 3 studies | 36% ± 8% | |
neural progenitor cell | 3 studies | 45% ± 11% | |
adventitial cell | 3 studies | 33% ± 17% | |
endothelial cell of artery | 3 studies | 44% ± 19% | |
natural killer cell | 3 studies | 21% ± 4% | |
respiratory goblet cell | 3 studies | 27% ± 16% | |
muscle cell | 3 studies | 27% ± 5% | |
basal cell | 3 studies | 29% ± 9% | |
plasmacytoid dendritic cell | 3 studies | 19% ± 1% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
prostate | 100% | 3820.47 | 244 / 245 | 92% | 7.10 | 464 / 502 |
kidney | 100% | 2587.15 | 89 / 89 | 88% | 6.67 | 792 / 901 |
breast | 100% | 3154.86 | 459 / 459 | 84% | 8.05 | 944 / 1118 |
thymus | 100% | 2523.39 | 652 / 653 | 80% | 4.32 | 485 / 605 |
brain | 80% | 1061.44 | 2114 / 2642 | 96% | 9.26 | 675 / 705 |
pancreas | 99% | 1237.03 | 326 / 328 | 72% | 3.50 | 129 / 178 |
ovary | 100% | 3275.26 | 180 / 180 | 67% | 3.31 | 289 / 430 |
esophagus | 99% | 2608.69 | 1425 / 1445 | 68% | 5.02 | 125 / 183 |
lung | 100% | 3057.14 | 577 / 578 | 65% | 3.73 | 756 / 1155 |
uterus | 100% | 4047.51 | 170 / 170 | 56% | 3.59 | 258 / 459 |
skin | 89% | 1549.08 | 1617 / 1809 | 62% | 3.29 | 292 / 472 |
stomach | 100% | 2161.53 | 359 / 359 | 37% | 2.25 | 107 / 286 |
bladder | 100% | 3774.90 | 21 / 21 | 36% | 1.77 | 183 / 504 |
liver | 96% | 1062.73 | 216 / 226 | 36% | 1.25 | 147 / 406 |
intestine | 98% | 3672.05 | 951 / 966 | 27% | 1.18 | 142 / 527 |
adrenal gland | 63% | 537.17 | 163 / 258 | 56% | 2.40 | 129 / 230 |
blood vessel | 100% | 4775.12 | 1335 / 1335 | 0% | 0 | 0 / 0 |
adipose | 100% | 3087.53 | 1203 / 1204 | 0% | 0 | 0 / 0 |
muscle | 100% | 2100.03 | 801 / 803 | 0% | 0 | 0 / 0 |
spleen | 99% | 1414.45 | 239 / 241 | 0% | 0 | 0 / 0 |
heart | 74% | 908.07 | 639 / 861 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 64% | 3.18 | 29 / 45 |
lymph node | 0% | 0 | 0 / 0 | 62% | 3.17 | 18 / 29 |
peripheral blood | 32% | 306.94 | 294 / 929 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 4% | 0.08 | 3 / 80 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0006338 | Biological process | chromatin remodeling |
GO_0006355 | Biological process | regulation of DNA-templated transcription |
GO_0016604 | Cellular component | nuclear body |
GO_0005654 | Cellular component | nucleoplasm |
GO_0005829 | Cellular component | cytosol |
GO_0003677 | Molecular function | DNA binding |
GO_0042800 | Molecular function | histone H3K4 methyltransferase activity |
GO_0005515 | Molecular function | protein binding |
Gene name | SETBP1 |
Protein name | SET binding protein 1 SET-binding protein (SEB) |
Synonyms | KIAA0437 |
Description | |
Accessions | ENST00000678152.1 [Q9Y6X0-1] A0A7I2V4X1 ENST00000426838.8 [Q9Y6X0-2] ENST00000677699.1 ENST00000649279.2 [Q9Y6X0-1] Q9Y6X0 ENST00000677068.1 [Q9Y6X0-1] ENST00000677077.1 [Q9Y6X0-1] ENST00000677130.1 [Q9Y6X0-1] |