Name | Number of supported studies | Average coverage | |
---|---|---|---|
glutamatergic neuron | 11 studies | 57% ± 25% | |
type I pneumocyte | 10 studies | 41% ± 21% | |
oligodendrocyte precursor cell | 10 studies | 25% ± 10% | |
GABAergic neuron | 9 studies | 51% ± 23% | |
astrocyte | 9 studies | 28% ± 13% | |
endothelial cell | 7 studies | 39% ± 23% | |
interneuron | 6 studies | 53% ± 20% | |
epithelial cell | 6 studies | 25% ± 10% | |
retinal cone cell | 6 studies | 29% ± 8% | |
retinal rod cell | 6 studies | 25% ± 10% | |
adipocyte | 6 studies | 22% ± 6% | |
oligodendrocyte | 6 studies | 28% ± 11% | |
neuron | 5 studies | 34% ± 11% | |
retinal ganglion cell | 5 studies | 27% ± 7% | |
ciliated cell | 5 studies | 22% ± 9% | |
Mueller cell | 5 studies | 28% ± 4% | |
type II pneumocyte | 5 studies | 36% ± 6% | |
macrophage | 4 studies | 23% ± 6% | |
microglial cell | 4 studies | 25% ± 6% | |
amacrine cell | 4 studies | 33% ± 11% | |
retinal pigment epithelial cell | 4 studies | 50% ± 24% | |
T cell | 4 studies | 26% ± 9% | |
club cell | 4 studies | 26% ± 8% | |
endothelial cell of lymphatic vessel | 4 studies | 21% ± 1% | |
GABAergic interneuron | 3 studies | 44% ± 4% | |
granule cell | 3 studies | 28% ± 4% | |
GABAergic amacrine cell | 3 studies | 37% ± 10% | |
glycinergic amacrine cell | 3 studies | 27% ± 3% | |
neural progenitor cell | 3 studies | 25% ± 6% | |
fibroblast | 3 studies | 25% ± 7% | |
transit amplifying cell | 3 studies | 29% ± 15% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
ovary | 100% | 1312.41 | 180 / 180 | 100% | 3.73 | 430 / 430 |
brain | 100% | 1609.71 | 2632 / 2642 | 100% | 5.45 | 704 / 705 |
esophagus | 100% | 814.67 | 1443 / 1445 | 99% | 4.19 | 181 / 183 |
prostate | 100% | 916.22 | 245 / 245 | 98% | 3.26 | 494 / 502 |
thymus | 100% | 1015.86 | 653 / 653 | 98% | 4.97 | 595 / 605 |
lung | 100% | 1359.89 | 577 / 578 | 98% | 3.40 | 1134 / 1155 |
breast | 100% | 950.23 | 457 / 459 | 98% | 4.06 | 1100 / 1118 |
uterus | 100% | 1244.86 | 170 / 170 | 97% | 3.31 | 443 / 459 |
intestine | 100% | 1020.44 | 966 / 966 | 94% | 2.50 | 496 / 527 |
stomach | 99% | 604.93 | 354 / 359 | 95% | 3.06 | 272 / 286 |
bladder | 100% | 929.24 | 21 / 21 | 93% | 2.48 | 467 / 504 |
adrenal gland | 100% | 1486.94 | 258 / 258 | 92% | 2.46 | 212 / 230 |
pancreas | 99% | 584.50 | 324 / 328 | 92% | 2.09 | 164 / 178 |
kidney | 98% | 566.53 | 87 / 89 | 88% | 2.37 | 797 / 901 |
skin | 100% | 886.35 | 1806 / 1809 | 78% | 1.80 | 369 / 472 |
liver | 96% | 446.79 | 216 / 226 | 51% | 0.95 | 206 / 406 |
spleen | 100% | 827.35 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 3.48 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 3.29 | 1 / 1 |
blood vessel | 100% | 774.09 | 1331 / 1335 | 0% | 0 | 0 / 0 |
adipose | 100% | 898.26 | 1199 / 1204 | 0% | 0 | 0 / 0 |
muscle | 98% | 534.42 | 786 / 803 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 97% | 2.52 | 28 / 29 |
heart | 93% | 455.30 | 801 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 53% | 423.75 | 496 / 929 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 45% | 0.81 | 36 / 80 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0035024 | Biological process | negative regulation of Rho protein signal transduction |
GO_0030336 | Biological process | negative regulation of cell migration |
GO_0006351 | Biological process | DNA-templated transcription |
GO_0045892 | Biological process | negative regulation of DNA-templated transcription |
GO_0005654 | Cellular component | nucleoplasm |
GO_0031965 | Cellular component | nuclear membrane |
GO_0005737 | Cellular component | cytoplasm |
GO_0005634 | Cellular component | nucleus |
GO_0003714 | Molecular function | transcription corepressor activity |
GO_0005515 | Molecular function | protein binding |
Gene name | SCAI |
Protein name | Protein SCAI (Suppressor of cancer cell invasion protein) Suppressor of cancer cell invasion C9orf126 protein (Suppressor of cancer cell invasion) |
Synonyms | C9orf126 |
Description | FUNCTION: Tumor suppressor which functions to suppress MRTFA-induced SRF transcriptional activity. May function in the RHOA-DIAPH1 signal transduction pathway and regulate cell migration through transcriptional regulation of ITGB1. . |
Accessions | H7C5A3 ENST00000336505.11 [Q8N9R8-1] H7C4U2 ENST00000467917.5 Q3SXZ0 ENST00000373549.8 [Q8N9R8-2] ENST00000477186.5 ENST00000494102.2 Q8N9R8 |