Name | Number of supported studies | Average coverage | |
---|---|---|---|
fibroblast | 19 studies | 37% ± 13% | |
astrocyte | 18 studies | 49% ± 19% | |
endothelial cell | 18 studies | 31% ± 12% | |
oligodendrocyte precursor cell | 14 studies | 56% ± 16% | |
smooth muscle cell | 11 studies | 31% ± 11% | |
macrophage | 11 studies | 31% ± 13% | |
microglial cell | 11 studies | 31% ± 16% | |
pericyte | 9 studies | 33% ± 17% | |
GABAergic neuron | 8 studies | 50% ± 24% | |
adipocyte | 8 studies | 37% ± 8% | |
endothelial cell of lymphatic vessel | 7 studies | 37% ± 14% | |
type I pneumocyte | 7 studies | 44% ± 19% | |
glutamatergic neuron | 7 studies | 39% ± 25% | |
cardiac muscle cell | 6 studies | 71% ± 18% | |
cholangiocyte | 4 studies | 37% ± 24% | |
hepatocyte | 4 studies | 55% ± 29% | |
interneuron | 4 studies | 52% ± 22% | |
epithelial cell | 4 studies | 38% ± 19% | |
myeloid cell | 4 studies | 35% ± 12% | |
connective tissue cell | 4 studies | 27% ± 9% | |
oligodendrocyte | 4 studies | 41% ± 13% | |
mast cell | 4 studies | 34% ± 11% | |
hepatic stellate cell | 3 studies | 48% ± 14% | |
GABAergic interneuron | 3 studies | 29% ± 7% | |
lymphocyte | 3 studies | 22% ± 7% | |
vein endothelial cell | 3 studies | 36% ± 19% | |
endothelial cell of vascular tree | 3 studies | 27% ± 9% | |
retinal pigment epithelial cell | 3 studies | 39% ± 15% | |
ependymal cell | 3 studies | 58% ± 10% | |
alveolar macrophage | 3 studies | 30% ± 1% | |
myofibroblast cell | 3 studies | 36% ± 12% | |
muscle cell | 3 studies | 37% ± 25% | |
granule cell | 3 studies | 25% ± 5% | |
neuron | 3 studies | 43% ± 13% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
brain | 99% | 4944.91 | 2622 / 2642 | 100% | 22.97 | 704 / 705 |
skin | 90% | 2957.06 | 1622 / 1809 | 99% | 15.02 | 469 / 472 |
prostate | 98% | 5127.84 | 241 / 245 | 90% | 5.77 | 451 / 502 |
thymus | 94% | 2441.80 | 612 / 653 | 92% | 15.03 | 558 / 605 |
lung | 99% | 6647.24 | 575 / 578 | 86% | 6.93 | 988 / 1155 |
breast | 99% | 4458.99 | 456 / 459 | 82% | 4.61 | 921 / 1118 |
liver | 94% | 2719.07 | 212 / 226 | 82% | 4.25 | 332 / 406 |
intestine | 92% | 7772.77 | 885 / 966 | 73% | 3.82 | 387 / 527 |
uterus | 99% | 7283.81 | 168 / 170 | 65% | 4.25 | 297 / 459 |
kidney | 66% | 1868.67 | 59 / 89 | 96% | 8.40 | 862 / 901 |
esophagus | 74% | 4381.88 | 1063 / 1445 | 83% | 5.59 | 152 / 183 |
bladder | 90% | 6076.76 | 19 / 21 | 63% | 3.69 | 320 / 504 |
stomach | 60% | 2789.69 | 214 / 359 | 79% | 5.03 | 227 / 286 |
pancreas | 27% | 458.90 | 90 / 328 | 93% | 7.09 | 165 / 178 |
adrenal gland | 44% | 780.59 | 113 / 258 | 68% | 3.85 | 156 / 230 |
ovary | 38% | 988.59 | 69 / 180 | 67% | 2.88 | 287 / 430 |
muscle | 100% | 8088.58 | 802 / 803 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 8956.92 | 1332 / 1335 | 0% | 0 | 0 / 0 |
adipose | 99% | 5044.45 | 1197 / 1204 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 99% | 22.41 | 79 / 80 |
heart | 98% | 8839.39 | 846 / 861 | 0% | 0 | 0 / 0 |
spleen | 94% | 1961.95 | 227 / 241 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 90% | 4.30 | 26 / 29 |
tonsil | 0% | 0 | 0 / 0 | 58% | 2.38 | 26 / 45 |
peripheral blood | 9% | 147.87 | 80 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0017148 | Biological process | negative regulation of translation |
GO_0000289 | Biological process | nuclear-transcribed mRNA poly(A) tail shortening |
GO_0045727 | Biological process | positive regulation of translation |
GO_0000932 | Cellular component | P-body |
GO_0030054 | Cellular component | cell junction |
GO_0001650 | Cellular component | fibrillar center |
GO_0005829 | Cellular component | cytosol |
GO_0045202 | Cellular component | synapse |
GO_0030425 | Cellular component | dendrite |
GO_0030371 | Molecular function | translation repressor activity |
GO_0005515 | Molecular function | protein binding |
GO_0003729 | Molecular function | mRNA binding |
GO_0003723 | Molecular function | RNA binding |
Gene name | SAMD4A |
Protein name | Sterile alpha motif domain containing 4A Protein Smaug homolog 1 (Smaug 1) (hSmaug1) (Sterile alpha motif domain-containing protein 4A) (SAM domain-containing protein 4A) SAMD4A protein |
Synonyms | SMAUG1 hCG_2028314 KIAA1053 SAMD4 |
Description | FUNCTION: Acts as a translational repressor of SRE-containing messengers. . |
Accessions | ENST00000392067.7 [Q9UPU9-1] Q8WW19 ENST00000631086.2 ENST00000554335.6 [Q9UPU9-1] ENST00000251091.9 [Q9UPU9-3] G3V2R1 Q9UPU9 ENST00000555192.1 |