Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 19 studies | 41% ± 17% | |
oligodendrocyte | 15 studies | 64% ± 14% | |
glutamatergic neuron | 12 studies | 67% ± 26% | |
GABAergic neuron | 10 studies | 57% ± 31% | |
oligodendrocyte precursor cell | 9 studies | 29% ± 11% | |
microglial cell | 8 studies | 34% ± 15% | |
neuron | 7 studies | 45% ± 22% | |
epithelial cell | 7 studies | 36% ± 21% | |
astrocyte | 6 studies | 34% ± 21% | |
interneuron | 6 studies | 60% ± 31% | |
club cell | 6 studies | 42% ± 20% | |
basal cell | 6 studies | 50% ± 19% | |
cardiac muscle cell | 5 studies | 37% ± 10% | |
mesothelial cell | 5 studies | 46% ± 12% | |
ciliated cell | 5 studies | 41% ± 13% | |
type I pneumocyte | 5 studies | 60% ± 6% | |
type II pneumocyte | 5 studies | 47% ± 5% | |
granule cell | 4 studies | 55% ± 22% | |
amacrine cell | 4 studies | 30% ± 11% | |
retina horizontal cell | 4 studies | 31% ± 14% | |
retinal cone cell | 4 studies | 68% ± 18% | |
retinal rod cell | 4 studies | 42% ± 5% | |
respiratory goblet cell | 4 studies | 55% ± 20% | |
endothelial cell of artery | 4 studies | 41% ± 22% | |
cholangiocyte | 3 studies | 38% ± 16% | |
GABAergic interneuron | 3 studies | 62% ± 14% | |
GABAergic amacrine cell | 3 studies | 32% ± 15% | |
glycinergic amacrine cell | 3 studies | 24% ± 4% | |
retinal ganglion cell | 3 studies | 36% ± 20% | |
endothelial cell of vascular tree | 3 studies | 20% ± 2% | |
hepatocyte | 3 studies | 50% ± 14% | |
retinal pigment epithelial cell | 3 studies | 37% ± 11% | |
capillary endothelial cell | 3 studies | 47% ± 2% | |
goblet cell | 3 studies | 40% ± 25% | |
endothelial cell of lymphatic vessel | 3 studies | 28% ± 10% | |
mucus secreting cell | 3 studies | 50% ± 5% | |
plasma cell | 3 studies | 29% ± 5% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
pancreas | 98% | 464.93 | 323 / 328 | 93% | 6.43 | 166 / 178 |
lung | 100% | 961.25 | 576 / 578 | 90% | 8.12 | 1045 / 1155 |
thymus | 100% | 1295.12 | 653 / 653 | 88% | 8.98 | 533 / 605 |
stomach | 81% | 511.08 | 290 / 359 | 89% | 6.72 | 255 / 286 |
breast | 78% | 437.53 | 356 / 459 | 92% | 8.43 | 1026 / 1118 |
intestine | 71% | 440.20 | 685 / 966 | 91% | 5.86 | 480 / 527 |
bladder | 81% | 604.00 | 17 / 21 | 79% | 4.98 | 396 / 504 |
kidney | 100% | 848.80 | 89 / 89 | 59% | 3.66 | 528 / 901 |
esophagus | 61% | 337.65 | 878 / 1445 | 84% | 9.31 | 154 / 183 |
ovary | 45% | 98.68 | 81 / 180 | 93% | 6.18 | 401 / 430 |
prostate | 98% | 624.74 | 241 / 245 | 37% | 1.23 | 186 / 502 |
brain | 99% | 1384.45 | 2614 / 2642 | 34% | 1.58 | 239 / 705 |
uterus | 68% | 188.99 | 116 / 170 | 61% | 3.43 | 281 / 459 |
adrenal gland | 85% | 304.31 | 219 / 258 | 31% | 1.06 | 72 / 230 |
liver | 88% | 301.80 | 199 / 226 | 14% | 0.56 | 55 / 406 |
spleen | 100% | 547.61 | 241 / 241 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 100% | 2.94 | 1 / 1 |
blood vessel | 93% | 424.26 | 1246 / 1335 | 0% | 0 | 0 / 0 |
heart | 85% | 424.48 | 728 / 861 | 0% | 0 | 0 / 0 |
skin | 66% | 206.92 | 1195 / 1809 | 4% | 0.14 | 17 / 472 |
tonsil | 0% | 0 | 0 / 0 | 64% | 4.33 | 29 / 45 |
adipose | 56% | 152.64 | 675 / 1204 | 0% | 0 | 0 / 0 |
peripheral blood | 19% | 153.60 | 172 / 929 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 7% | 0.26 | 2 / 29 |
eye | 0% | 0 | 0 / 0 | 1% | 0.03 | 1 / 80 |
muscle | 0% | 0.21 | 1 / 803 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0007169 | Biological process | cell surface receptor protein tyrosine kinase signaling pathway |
GO_0008150 | Biological process | biological_process |
GO_0009898 | Cellular component | cytoplasmic side of plasma membrane |
GO_0005575 | Cellular component | cellular_component |
GO_0005515 | Molecular function | protein binding |
GO_0003674 | Molecular function | molecular_function |
Gene name | SAMD12 |
Protein name | Sterile alpha motif domain containing 12 Sterile alpha motif domain-containing protein 12 (SAM domain-containing protein 12) |
Synonyms | |
Description | |
Accessions | H0YEJ0 B8ZZB7 ENST00000524796.6 ENST00000409003.5 ENST00000314727.9 Q8N8I0 F8VYB8 ENST00000445741.6 |