Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 2087.28 | 1445 / 1445 | 100% | 20.07 | 183 / 183 |
skin | 100% | 2455.77 | 1808 / 1809 | 100% | 34.07 | 472 / 472 |
brain | 100% | 2134.80 | 2640 / 2642 | 100% | 21.03 | 705 / 705 |
intestine | 100% | 1947.30 | 966 / 966 | 100% | 30.01 | 525 / 527 |
prostate | 100% | 3256.27 | 245 / 245 | 100% | 30.62 | 500 / 502 |
stomach | 100% | 1721.63 | 359 / 359 | 99% | 26.57 | 284 / 286 |
breast | 100% | 2355.97 | 459 / 459 | 99% | 22.36 | 1110 / 1118 |
bladder | 100% | 2191.76 | 21 / 21 | 99% | 31.78 | 500 / 504 |
pancreas | 100% | 1180.96 | 327 / 328 | 99% | 22.49 | 177 / 178 |
uterus | 100% | 2224.93 | 170 / 170 | 99% | 31.35 | 455 / 459 |
thymus | 100% | 2179.89 | 653 / 653 | 99% | 23.13 | 599 / 605 |
lung | 100% | 2070.92 | 577 / 578 | 99% | 25.29 | 1144 / 1155 |
ovary | 100% | 2259.73 | 180 / 180 | 98% | 18.03 | 422 / 430 |
kidney | 100% | 2251.69 | 89 / 89 | 98% | 15.66 | 884 / 901 |
liver | 100% | 1466.23 | 226 / 226 | 98% | 17.05 | 397 / 406 |
adrenal gland | 100% | 2269.27 | 258 / 258 | 91% | 15.08 | 210 / 230 |
adipose | 100% | 1987.56 | 1204 / 1204 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 100% | 27.30 | 80 / 80 |
lymph node | 0% | 0 | 0 / 0 | 100% | 64.80 | 29 / 29 |
spleen | 100% | 2737.78 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 32.57 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 42.60 | 1 / 1 |
blood vessel | 100% | 1746.84 | 1333 / 1335 | 0% | 0 | 0 / 0 |
heart | 99% | 1352.74 | 855 / 861 | 0% | 0 | 0 / 0 |
muscle | 99% | 1211.82 | 795 / 803 | 0% | 0 | 0 / 0 |
peripheral blood | 97% | 1914.98 | 904 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0061523 | Biological process | cilium disassembly |
GO_1902570 | Biological process | protein localization to nucleolus |
GO_0000028 | Biological process | ribosomal small subunit assembly |
GO_0001825 | Biological process | blastocyst formation |
GO_0042254 | Biological process | ribosome biogenesis |
GO_0006364 | Biological process | rRNA processing |
GO_0042274 | Biological process | ribosomal small subunit biogenesis |
GO_0005730 | Cellular component | nucleolus |
GO_0005813 | Cellular component | centrosome |
GO_0034456 | Cellular component | UTP-C complex |
GO_0005929 | Cellular component | cilium |
GO_0032545 | Cellular component | CURI complex |
GO_0005654 | Cellular component | nucleoplasm |
GO_0032040 | Cellular component | small-subunit processome |
GO_0005737 | Cellular component | cytoplasm |
GO_0005515 | Molecular function | protein binding |
GO_0003723 | Molecular function | RNA binding |
Gene name | RRP7A |
Protein name | Ribosomal RNA processing 7 homolog A Ribosomal RNA-processing protein 7 homolog A (Gastric cancer antigen Zg14) |
Synonyms | CGI-96 |
Description | FUNCTION: Nucleolar protein that is involved in ribosomal RNA (rRNA) processing . Also plays a role in primary cilia resorption, and cell cycle progression in neurogenesis and neocortex development . Part of the small subunit (SSU) processome, first precursor of the small eukaryotic ribosomal subunit. During the assembly of the SSU processome in the nucleolus, many ribosome biogenesis factors, an RNA chaperone and ribosomal proteins associate with the nascent pre-rRNA and work in concert to generate RNA folding, modifications, rearrangements and cleavage as well as targeted degradation of pre-ribosomal RNA by the RNA exosome . . |
Accessions | F8WAT7 ENST00000323013.7 Q9Y3A4 ENST00000416699.5 |