Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 14 studies | 29% ± 11% | |
astrocyte | 11 studies | 30% ± 13% | |
oligodendrocyte | 10 studies | 31% ± 10% | |
GABAergic neuron | 9 studies | 40% ± 24% | |
glutamatergic neuron | 9 studies | 52% ± 24% | |
oligodendrocyte precursor cell | 9 studies | 32% ± 14% | |
adipocyte | 9 studies | 24% ± 4% | |
fibroblast | 8 studies | 21% ± 7% | |
neuron | 7 studies | 34% ± 14% | |
interneuron | 6 studies | 42% ± 25% | |
macrophage | 6 studies | 24% ± 5% | |
microglial cell | 6 studies | 24% ± 5% | |
epithelial cell | 6 studies | 37% ± 19% | |
endothelial cell of lymphatic vessel | 6 studies | 24% ± 5% | |
pericyte | 6 studies | 23% ± 6% | |
retina horizontal cell | 5 studies | 21% ± 4% | |
retinal rod cell | 5 studies | 16% ± 1% | |
basal cell | 5 studies | 30% ± 13% | |
type I pneumocyte | 5 studies | 21% ± 6% | |
type II pneumocyte | 5 studies | 20% ± 4% | |
smooth muscle cell | 5 studies | 18% ± 2% | |
ciliated cell | 4 studies | 28% ± 5% | |
dendritic cell | 4 studies | 22% ± 6% | |
mast cell | 4 studies | 17% ± 2% | |
goblet cell | 4 studies | 23% ± 12% | |
conventional dendritic cell | 3 studies | 24% ± 8% | |
glomerular endothelial cell | 3 studies | 23% ± 3% | |
GABAergic interneuron | 3 studies | 27% ± 1% | |
retinal ganglion cell | 3 studies | 37% ± 8% | |
retinal cone cell | 3 studies | 26% ± 5% | |
cardiac muscle cell | 3 studies | 18% ± 3% | |
Mueller cell | 3 studies | 19% ± 1% | |
GABAergic amacrine cell | 3 studies | 26% ± 7% | |
glycinergic amacrine cell | 3 studies | 21% ± 3% | |
rod bipolar cell | 3 studies | 24% ± 3% | |
abnormal cell | 3 studies | 27% ± 13% | |
club cell | 3 studies | 22% ± 7% | |
monocyte | 3 studies | 20% ± 2% | |
transit amplifying cell | 3 studies | 35% ± 21% | |
granule cell | 3 studies | 24% ± 6% | |
plasmacytoid dendritic cell | 3 studies | 17% ± 2% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
brain | 100% | 5602.49 | 2642 / 2642 | 100% | 47.26 | 705 / 705 |
esophagus | 100% | 3900.61 | 1445 / 1445 | 100% | 28.55 | 183 / 183 |
lung | 100% | 3471.99 | 578 / 578 | 100% | 26.09 | 1153 / 1155 |
prostate | 100% | 4796.47 | 245 / 245 | 100% | 30.09 | 501 / 502 |
ovary | 100% | 4026.71 | 180 / 180 | 100% | 28.74 | 429 / 430 |
breast | 100% | 3550.84 | 459 / 459 | 100% | 32.49 | 1114 / 1118 |
thymus | 100% | 4198.10 | 653 / 653 | 99% | 32.92 | 601 / 605 |
intestine | 100% | 3953.60 | 966 / 966 | 99% | 18.61 | 523 / 527 |
pancreas | 100% | 1915.31 | 327 / 328 | 99% | 16.36 | 177 / 178 |
uterus | 100% | 4255.19 | 170 / 170 | 99% | 24.02 | 455 / 459 |
stomach | 100% | 2657.18 | 359 / 359 | 99% | 19.62 | 283 / 286 |
bladder | 100% | 4613.71 | 21 / 21 | 99% | 21.77 | 498 / 504 |
kidney | 100% | 3423.39 | 89 / 89 | 97% | 18.58 | 878 / 901 |
adrenal gland | 100% | 4627.00 | 258 / 258 | 97% | 23.65 | 222 / 230 |
liver | 100% | 1648.85 | 226 / 226 | 94% | 14.40 | 382 / 406 |
skin | 100% | 3419.51 | 1808 / 1809 | 92% | 23.34 | 436 / 472 |
adipose | 100% | 3243.86 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 4745.70 | 1335 / 1335 | 0% | 0 | 0 / 0 |
muscle | 100% | 4023.18 | 803 / 803 | 0% | 0 | 0 / 0 |
spleen | 100% | 3266.61 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 27.31 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 9.20 | 1 / 1 |
heart | 98% | 2578.03 | 841 / 861 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 93% | 13.91 | 27 / 29 |
eye | 0% | 0 | 0 / 0 | 85% | 13.64 | 68 / 80 |
peripheral blood | 70% | 1382.16 | 647 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0031124 | Biological process | mRNA 3'-end processing |
GO_0001111 | Biological process | RNA polymerase II promoter clearance |
GO_0097550 | Cellular component | transcription preinitiation complex |
GO_0005654 | Cellular component | nucleoplasm |
GO_0005634 | Cellular component | nucleus |
GO_0000993 | Molecular function | RNA polymerase II complex binding |
GO_0005515 | Molecular function | protein binding |
GO_0099122 | Molecular function | RNA polymerase II C-terminal domain binding |
Gene name | RPRD1A |
Protein name | Regulation of nuclear pre-mRNA domain-containing protein Regulation of nuclear pre-mRNA domain-containing protein 1A (Cyclin-dependent kinase inhibitor 2B-related protein) (p15INK4B-related protein) Regulation of nuclear pre-mRNA domain containing 1A |
Synonyms | P15RS |
Description | FUNCTION: Interacts with phosphorylated C-terminal heptapeptide repeat domain (CTD) of the largest RNA polymerase II subunit POLR2A, and participates in dephosphorylation of the CTD by RPAP2. May act as a negative regulator of cyclin-D1 (CCND1) and cyclin-E (CCNE1) in the cell cycle. . FUNCTION: Interacts with phosphorylated C-terminal heptapeptide repeat domain (CTD) of the largest RNA polymerase II subunit POLR2A, and participates in dephosphorylation of the CTD by RPAP2. May act as a negative regulator of cyclin-D1 (CCND1) and cyclin-E (CCNE1) in the cell cycle. . FUNCTION: Interacts with phosphorylated C-terminal heptapeptide repeat domain (CTD) of the largest RNA polymerase II subunit POLR2A, and participates in dephosphorylation of the CTD. . FUNCTION: Interacts with phosphorylated C-terminal heptapeptide repeat domain (CTD) of the largest RNA polymerase II subunit POLR2A, and participates in dephosphorylation of the CTD. . |
Accessions | ENST00000357384.8 [Q96P16-1] ENST00000399022.9 [Q96P16-1] ENST00000590898.5 [Q96P16-3] ENST00000585953.5 K7ER50 ENST00000587563.5 K7EP82 A0A0C4DGQ6 Q96P16 ENST00000588737.5 [Q96P16-3] K7EQR8 ENST00000589050.1 ENST00000592674.1 |