Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 27 studies | 29% ± 10% | |
ciliated cell | 18 studies | 35% ± 15% | |
endothelial cell of lymphatic vessel | 16 studies | 32% ± 15% | |
capillary endothelial cell | 11 studies | 22% ± 6% | |
vein endothelial cell | 10 studies | 33% ± 21% | |
endothelial cell of artery | 9 studies | 32% ± 13% | |
endothelial cell of vascular tree | 9 studies | 29% ± 16% | |
retinal rod cell | 5 studies | 25% ± 5% | |
epithelial cell | 4 studies | 31% ± 5% | |
retinal cone cell | 4 studies | 32% ± 12% | |
astrocyte | 4 studies | 29% ± 4% | |
B cell | 3 studies | 25% ± 2% | |
GABAergic neuron | 3 studies | 29% ± 8% | |
glutamatergic neuron | 3 studies | 36% ± 6% | |
ependymal cell | 3 studies | 59% ± 8% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
bladder | 100% | 1096.24 | 21 / 21 | 99% | 3.52 | 497 / 504 |
esophagus | 98% | 999.36 | 1423 / 1445 | 100% | 5.50 | 183 / 183 |
lung | 99% | 2254.94 | 575 / 578 | 99% | 3.96 | 1143 / 1155 |
prostate | 100% | 1003.20 | 244 / 245 | 99% | 3.45 | 496 / 502 |
breast | 100% | 2464.84 | 459 / 459 | 98% | 4.27 | 1096 / 1118 |
intestine | 100% | 1149.46 | 964 / 966 | 98% | 4.59 | 517 / 527 |
ovary | 99% | 765.56 | 179 / 180 | 97% | 5.12 | 419 / 430 |
thymus | 100% | 1363.92 | 652 / 653 | 97% | 3.57 | 587 / 605 |
brain | 97% | 786.26 | 2574 / 2642 | 99% | 5.36 | 701 / 705 |
skin | 100% | 933.28 | 1802 / 1809 | 94% | 5.28 | 446 / 472 |
uterus | 100% | 1633.41 | 170 / 170 | 93% | 3.39 | 429 / 459 |
stomach | 95% | 736.73 | 340 / 359 | 99% | 4.88 | 282 / 286 |
adrenal gland | 99% | 639.56 | 255 / 258 | 93% | 2.78 | 215 / 230 |
pancreas | 93% | 557.10 | 305 / 328 | 98% | 3.81 | 174 / 178 |
kidney | 94% | 644.44 | 84 / 89 | 92% | 2.84 | 825 / 901 |
liver | 40% | 185.79 | 90 / 226 | 68% | 1.60 | 275 / 406 |
adipose | 100% | 2615.03 | 1204 / 1204 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 100% | 1.57 | 1 / 1 |
spleen | 100% | 653.63 | 240 / 241 | 0% | 0 | 0 / 0 |
blood vessel | 97% | 808.09 | 1294 / 1335 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 91% | 2.52 | 41 / 45 |
heart | 91% | 744.75 | 783 / 861 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 86% | 2.64 | 25 / 29 |
muscle | 82% | 816.84 | 657 / 803 | 0% | 0 | 0 / 0 |
peripheral blood | 68% | 426.91 | 629 / 929 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 68% | 1.75 | 54 / 80 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0060271 | Biological process | cilium assembly |
GO_0007601 | Biological process | visual perception |
GO_0016567 | Biological process | protein ubiquitination |
GO_0006511 | Biological process | ubiquitin-dependent protein catabolic process |
GO_0006886 | Biological process | intracellular protein transport |
GO_0042073 | Biological process | intraciliary transport |
GO_0005813 | Cellular component | centrosome |
GO_0036064 | Cellular component | ciliary basal body |
GO_0036126 | Cellular component | sperm flagellum |
GO_0005794 | Cellular component | Golgi apparatus |
GO_0001750 | Cellular component | photoreceptor outer segment |
GO_0005737 | Cellular component | cytoplasm |
GO_0061630 | Molecular function | ubiquitin protein ligase activity |
GO_0005085 | Molecular function | guanyl-nucleotide exchange factor activity |
GO_0005515 | Molecular function | protein binding |
GO_0003723 | Molecular function | RNA binding |
Gene name | RPGR |
Protein name | X-linked retinitis pigmentosa GTPase regulator splice variant 9 Retinitis pigmentosa GTPase regulator isoform 1 (Retinitis pigmentosa GTPase regulator, isoform CRA_c) Retinitis pigmentosa GTPase regulator isoform 2 X-linked retinitis pigmentosa GTPase regulator X-linked retinitis pigmentosa GTPase regulator splice variant 7 X-linked retinitis pigmentosa GTPase regulator splice variant 8 Retinitis pigmentosa GTPase regulator |
Synonyms | hCG_1811533 RP3 XLRP3 |
Description | FUNCTION: Could be a guanine-nucleotide releasing factor. Plays a role in ciliogenesis. Probably regulates cilia formation by regulating actin stress filaments and cell contractility. Plays an important role in photoreceptor integrity. May play a critical role in spermatogenesis and in intraflagellar transport processes (By similarity). May be involved in microtubule organization and regulation of transport in primary cilia. . |
Accessions | ENST00000642395.2 [Q92834-2] ENST00000642558.1 ENST00000464437.1 ENST00000646020.1 ENST00000642373.1 A0A0S2Z4Y6 A0A2R8YF02 Q92834 ENST00000645124.1 ENST00000482855.5 [Q92834-3] A0A9Y1MW53 A0A0S2Z4D6 A0A9Y1I0G0 ENST00000642739.1 ENST00000474584.5 [Q92834-5] A0A2R8Y414 ENST00000644238.1 H7C4L1 ENST00000645032.1 [Q92834-6] A0A2R8YDN2 Q9HD28 H7C4H4 A0A9Y1MWX5 A0A2R8Y838 A0A2R8Y4C9 ENST00000339363.7 [Q92834-1] ENST00000647261.1 A0A2R8YFT6 A0A2R8YGY6 ENST00000494707.6 ENST00000644337.1 [Q92834-4] |