Name | Number of supported studies | Average coverage | |
---|---|---|---|
peripheral blood | 4 studies | 18% ± 1% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
lung | 100% | 417.29 | 578 / 578 | 71% | 2.41 | 822 / 1155 |
breast | 88% | 127.75 | 402 / 459 | 59% | 2.20 | 659 / 1118 |
kidney | 63% | 85.15 | 56 / 89 | 64% | 2.89 | 574 / 901 |
stomach | 73% | 61.01 | 261 / 359 | 53% | 1.91 | 152 / 286 |
thymus | 87% | 167.13 | 569 / 653 | 39% | 1.22 | 234 / 605 |
prostate | 80% | 102.57 | 197 / 245 | 29% | 0.63 | 144 / 502 |
uterus | 59% | 49.89 | 101 / 170 | 47% | 1.51 | 218 / 459 |
liver | 81% | 95.34 | 182 / 226 | 26% | 0.82 | 106 / 406 |
bladder | 67% | 102.67 | 14 / 21 | 35% | 1.09 | 177 / 504 |
intestine | 64% | 180.92 | 622 / 966 | 37% | 1.04 | 196 / 527 |
spleen | 100% | 1206.78 | 241 / 241 | 0% | 0 | 0 / 0 |
skin | 31% | 21.41 | 553 / 1809 | 68% | 6.20 | 320 / 472 |
peripheral blood | 97% | 1116.11 | 904 / 929 | 0% | 0 | 0 / 0 |
adipose | 97% | 239.96 | 1166 / 1204 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 97% | 22.79 | 28 / 29 |
esophagus | 41% | 29.56 | 596 / 1445 | 47% | 1.34 | 86 / 183 |
tonsil | 0% | 0 | 0 / 0 | 80% | 3.34 | 36 / 45 |
pancreas | 9% | 4.85 | 28 / 328 | 53% | 1.78 | 94 / 178 |
ovary | 27% | 18.24 | 49 / 180 | 29% | 0.59 | 123 / 430 |
blood vessel | 55% | 60.59 | 730 / 1335 | 0% | 0 | 0 / 0 |
heart | 34% | 24.23 | 290 / 861 | 0% | 0 | 0 / 0 |
adrenal gland | 25% | 15.49 | 65 / 258 | 6% | 0.12 | 13 / 230 |
eye | 0% | 0 | 0 / 0 | 23% | 1.04 | 18 / 80 |
muscle | 9% | 5.19 | 74 / 803 | 0% | 0 | 0 / 0 |
brain | 5% | 2.88 | 133 / 2642 | 3% | 0.07 | 19 / 705 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0035457 | Biological process | cellular response to interferon-alpha |
GO_2000060 | Biological process | positive regulation of ubiquitin-dependent protein catabolic process |
GO_1902164 | Biological process | positive regulation of DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator |
GO_0045893 | Biological process | positive regulation of DNA-templated transcription |
GO_0050821 | Biological process | protein stabilization |
GO_0031648 | Biological process | protein destabilization |
GO_0035458 | Biological process | cellular response to interferon-beta |
GO_1900182 | Biological process | positive regulation of protein localization to nucleus |
GO_0043388 | Biological process | positive regulation of DNA binding |
GO_0002218 | Biological process | activation of innate immune response |
GO_0016607 | Cellular component | nuclear speck |
GO_0005730 | Cellular component | nucleolus |
GO_0032991 | Cellular component | protein-containing complex |
GO_0005654 | Cellular component | nucleoplasm |
GO_0005829 | Cellular component | cytosol |
GO_0003690 | Molecular function | double-stranded DNA binding |
GO_0031625 | Molecular function | ubiquitin protein ligase binding |
Gene name | PYHIN1 |
Protein name | Pyrin and HIN domain family member 1 Pyrin and HIN domain-containing protein 1 (Interferon-inducible protein X) |
Synonyms | IFIX |
Description | FUNCTION: Major mediator of the tumor suppressor activity of IFN in breast cancer cells. Promotes ubiquitination and subsequent degradation of MDM2, which leads to p53/TP53 stabilization. Promotes ubiquitination and subsequent degradation of HDAC1, which in turn enhances maspin expression, and impairs invasive activity of cancer cells. . |
Accessions | Q6K0P9 ENST00000392252.7 [Q6K0P9-4] ENST00000368140.6 [Q6K0P9-1] ENST00000368138.7 [Q6K0P9-2] ENST00000458222.5 ENST00000368135.4 [Q6K0P9-5] X6RHR0 ENST00000392254.6 [Q6K0P9-3] |