Name | Number of supported studies | Average coverage | |
---|---|---|---|
macrophage | 33 studies | 30% ± 11% | |
B cell | 29 studies | 28% ± 10% | |
conventional dendritic cell | 25 studies | 36% ± 15% | |
endothelial cell | 19 studies | 43% ± 17% | |
plasmacytoid dendritic cell | 18 studies | 40% ± 11% | |
monocyte | 17 studies | 28% ± 10% | |
classical monocyte | 17 studies | 31% ± 9% | |
naive B cell | 16 studies | 33% ± 10% | |
dendritic cell | 15 studies | 38% ± 19% | |
non-classical monocyte | 14 studies | 26% ± 8% | |
oligodendrocyte | 13 studies | 40% ± 15% | |
astrocyte | 13 studies | 46% ± 18% | |
glutamatergic neuron | 12 studies | 82% ± 17% | |
GABAergic neuron | 11 studies | 67% ± 28% | |
microglial cell | 11 studies | 38% ± 15% | |
oligodendrocyte precursor cell | 11 studies | 43% ± 13% | |
myeloid cell | 11 studies | 37% ± 14% | |
memory B cell | 10 studies | 25% ± 5% | |
type I pneumocyte | 9 studies | 55% ± 28% | |
neutrophil | 9 studies | 34% ± 8% | |
amacrine cell | 8 studies | 54% ± 30% | |
alveolar macrophage | 7 studies | 32% ± 9% | |
interneuron | 6 studies | 66% ± 27% | |
retinal ganglion cell | 6 studies | 68% ± 20% | |
mast cell | 6 studies | 25% ± 9% | |
retina horizontal cell | 6 studies | 64% ± 21% | |
cardiac muscle cell | 6 studies | 63% ± 21% | |
type II pneumocyte | 6 studies | 61% ± 19% | |
mononuclear phagocyte | 5 studies | 34% ± 11% | |
neuron | 5 studies | 56% ± 21% | |
precursor B cell | 5 studies | 40% ± 10% | |
mesothelial cell | 5 studies | 40% ± 11% | |
granule cell | 4 studies | 50% ± 24% | |
plasma cell | 4 studies | 31% ± 7% | |
epithelial cell | 4 studies | 31% ± 14% | |
immature B cell | 4 studies | 43% ± 10% | |
pro-B cell | 4 studies | 27% ± 7% | |
Mueller cell | 4 studies | 31% ± 8% | |
leukocyte | 4 studies | 30% ± 9% | |
club cell | 4 studies | 30% ± 10% | |
smooth muscle cell | 4 studies | 27% ± 7% | |
pericyte | 3 studies | 36% ± 16% | |
GABAergic interneuron | 3 studies | 67% ± 10% | |
tissue-resident macrophage | 3 studies | 36% ± 7% | |
retinal bipolar neuron | 3 studies | 47% ± 24% | |
GABAergic amacrine cell | 3 studies | 78% ± 7% | |
OFF-bipolar cell | 3 studies | 47% ± 22% | |
ON-bipolar cell | 3 studies | 63% ± 17% | |
glycinergic amacrine cell | 3 studies | 79% ± 12% | |
endothelial cell of vascular tree | 3 studies | 29% ± 7% | |
neural progenitor cell | 3 studies | 34% ± 14% | |
ependymal cell | 3 studies | 64% ± 8% | |
fibroblast | 3 studies | 32% ± 11% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
brain | 99% | 4270.29 | 2609 / 2642 | 94% | 5.88 | 663 / 705 |
skin | 62% | 331.14 | 1118 / 1809 | 96% | 13.36 | 455 / 472 |
lung | 99% | 1895.07 | 575 / 578 | 50% | 1.24 | 583 / 1155 |
kidney | 60% | 423.90 | 53 / 89 | 57% | 1.36 | 517 / 901 |
pancreas | 91% | 542.52 | 300 / 328 | 25% | 0.51 | 44 / 178 |
spleen | 100% | 1091.37 | 241 / 241 | 0% | 0 | 0 / 0 |
ovary | 26% | 125.53 | 47 / 180 | 73% | 2.82 | 315 / 430 |
blood vessel | 97% | 2145.51 | 1300 / 1335 | 0% | 0 | 0 / 0 |
peripheral blood | 88% | 2212.25 | 813 / 929 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 88% | 10.31 | 70 / 80 |
heart | 85% | 1695.99 | 731 / 861 | 0% | 0 | 0 / 0 |
breast | 49% | 250.12 | 223 / 459 | 32% | 0.72 | 357 / 1118 |
stomach | 44% | 699.75 | 159 / 359 | 28% | 0.66 | 81 / 286 |
lymph node | 0% | 0 | 0 / 0 | 72% | 3.34 | 21 / 29 |
bladder | 57% | 498.62 | 12 / 21 | 14% | 0.33 | 71 / 504 |
adipose | 67% | 392.99 | 803 / 1204 | 0% | 0 | 0 / 0 |
esophagus | 13% | 86.80 | 186 / 1445 | 26% | 0.55 | 47 / 183 |
uterus | 23% | 102.32 | 39 / 170 | 13% | 0.25 | 61 / 459 |
intestine | 23% | 167.74 | 220 / 966 | 13% | 0.24 | 66 / 527 |
thymus | 15% | 76.06 | 98 / 653 | 20% | 0.33 | 121 / 605 |
adrenal gland | 2% | 9.93 | 6 / 258 | 30% | 0.69 | 68 / 230 |
prostate | 29% | 133.10 | 72 / 245 | 2% | 0.05 | 12 / 502 |
tonsil | 0% | 0 | 0 / 0 | 16% | 0.21 | 7 / 45 |
liver | 1% | 6.13 | 3 / 226 | 3% | 0.06 | 13 / 406 |
muscle | 1% | 2.91 | 6 / 803 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0140059 | Biological process | dendrite arborization |
GO_0043149 | Biological process | stress fiber assembly |
GO_0048870 | Biological process | cell motility |
GO_0030036 | Biological process | actin cytoskeleton organization |
GO_0021987 | Biological process | cerebral cortex development |
GO_2001222 | Biological process | regulation of neuron migration |
GO_0031032 | Biological process | actomyosin structure organization |
GO_0005829 | Cellular component | cytosol |
GO_0045202 | Cellular component | synapse |
GO_0005634 | Cellular component | nucleus |
GO_0004864 | Molecular function | protein phosphatase inhibitor activity |
GO_0005515 | Molecular function | protein binding |
GO_0003779 | Molecular function | actin binding |
Gene name | PHACTR1 |
Protein name | Phosphatase and actin regulator 1 Phosphatase and actin regulator |
Synonyms | hCG_1818446 KIAA1733 RPEL1 |
Description | FUNCTION: Binds actin monomers (G actin) and plays a role in multiple processes including the regulation of actin cytoskeleton dynamics, actin stress fibers formation, cell motility and survival, formation of tubules by endothelial cells, and regulation of PPP1CA activity . Involved in the regulation of cortical neuron migration and dendrite arborization (By similarity). . |
Accessions | Q4VY12 ENST00000676234.1 A0A6Q8PG87 A0A6Q8PFA8 H0Y7G2 ENST00000379335.8 ENST00000689548.1 ENST00000676159.1 [Q9C0D0-1] ENST00000675203.2 A0A8I5KVE0 A0A8I5QJF9 ENST00000674637.1 [Q9C0D0-1] ENST00000332995.12 [Q9C0D0-1] ENST00000434977.1 ENST00000406205.7 H0Y3U1 ENST00000482982.2 ENST00000692995.1 Q9C0D0 ENST00000687600.1 ENST00000674595.1 A0A6Q8PGC2 |