Name | Number of supported studies | Average coverage | |
---|---|---|---|
type I pneumocyte | 12 studies | 32% ± 12% | |
type II pneumocyte | 7 studies | 22% ± 4% | |
retinal cone cell | 6 studies | 34% ± 15% | |
mesothelial cell | 5 studies | 23% ± 5% | |
epithelial cell | 5 studies | 44% ± 19% | |
retinal rod cell | 5 studies | 20% ± 1% | |
ciliated cell | 5 studies | 35% ± 15% | |
squamous epithelial cell | 4 studies | 43% ± 23% | |
basal cell | 4 studies | 26% ± 8% | |
kidney loop of Henle epithelial cell | 3 studies | 21% ± 1% | |
retinal pigment epithelial cell | 3 studies | 29% ± 8% | |
luminal hormone-sensing cell of mammary gland | 3 studies | 22% ± 3% | |
glutamatergic neuron | 3 studies | 26% ± 5% | |
renal principal cell | 3 studies | 23% ± 5% | |
secretory cell | 3 studies | 23% ± 4% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
eye | 4 studies | 19% ± 2% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
kidney | 100% | 1700.80 | 89 / 89 | 99% | 28.84 | 889 / 901 |
ovary | 95% | 199.64 | 171 / 180 | 99% | 22.27 | 427 / 430 |
thymus | 100% | 607.35 | 653 / 653 | 92% | 13.45 | 556 / 605 |
stomach | 94% | 845.64 | 339 / 359 | 95% | 16.91 | 272 / 286 |
lung | 99% | 914.35 | 574 / 578 | 87% | 11.71 | 1004 / 1155 |
pancreas | 100% | 426.20 | 328 / 328 | 84% | 10.85 | 149 / 178 |
esophagus | 91% | 304.16 | 1317 / 1445 | 88% | 17.40 | 161 / 183 |
intestine | 84% | 277.80 | 816 / 966 | 94% | 14.30 | 495 / 527 |
uterus | 98% | 279.86 | 167 / 170 | 76% | 8.40 | 348 / 459 |
breast | 73% | 350.84 | 336 / 459 | 93% | 44.61 | 1042 / 1118 |
prostate | 100% | 274.67 | 244 / 245 | 65% | 3.80 | 326 / 502 |
bladder | 81% | 205.62 | 17 / 21 | 81% | 10.35 | 408 / 504 |
liver | 100% | 488.13 | 226 / 226 | 55% | 5.70 | 223 / 406 |
adrenal gland | 98% | 243.12 | 254 / 258 | 9% | 0.80 | 21 / 230 |
ureter | 0% | 0 | 0 / 0 | 100% | 5.78 | 1 / 1 |
spleen | 100% | 265.86 | 240 / 241 | 0% | 0 | 0 / 0 |
brain | 88% | 172.53 | 2333 / 2642 | 8% | 0.48 | 54 / 705 |
skin | 73% | 283.14 | 1313 / 1809 | 10% | 0.56 | 46 / 472 |
blood vessel | 80% | 155.81 | 1065 / 1335 | 0% | 0 | 0 / 0 |
heart | 68% | 102.30 | 587 / 861 | 0% | 0 | 0 / 0 |
adipose | 61% | 227.47 | 732 / 1204 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 58% | 4.56 | 26 / 45 |
peripheral blood | 27% | 43.29 | 255 / 929 | 0% | 0 | 0 / 0 |
muscle | 19% | 20.46 | 154 / 803 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 1% | 0.09 | 1 / 80 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 29 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0007043 | Biological process | cell-cell junction assembly |
GO_0007163 | Biological process | establishment or maintenance of cell polarity |
GO_0051301 | Biological process | cell division |
GO_0060341 | Biological process | regulation of cellular localization |
GO_0065003 | Biological process | protein-containing complex assembly |
GO_0007098 | Biological process | centrosome cycle |
GO_0007409 | Biological process | axonogenesis |
GO_0030334 | Biological process | regulation of cell migration |
GO_0045197 | Biological process | establishment or maintenance of epithelial cell apical/basal polarity |
GO_0016324 | Cellular component | apical plasma membrane |
GO_0070160 | Cellular component | tight junction |
GO_0005886 | Cellular component | plasma membrane |
GO_0070062 | Cellular component | extracellular exosome |
GO_0005829 | Cellular component | cytosol |
GO_0005938 | Cellular component | cell cortex |
GO_0120157 | Cellular component | PAR polarity complex |
GO_0005923 | Cellular component | bicellular tight junction |
GO_0005634 | Cellular component | nucleus |
GO_0005515 | Molecular function | protein binding |
Gene name | PARD6B |
Protein name | Partitioning defective 6 homolog beta (PAR-6 beta) (PAR-6B) |
Synonyms | PAR6B |
Description | FUNCTION: Adapter protein involved in asymmetrical cell division and cell polarization processes. Probably involved in formation of epithelial tight junctions. Association with PARD3 may prevent the interaction of PARD3 with F11R/JAM1, thereby preventing tight junction assembly. The PARD6-PARD3 complex links GTP-bound Rho small GTPases to atypical protein kinase C proteins. |
Accessions | Q9BYG5 ENST00000371610.7 [Q9BYG5-1] ENST00000396039.1 [Q9BYG5-2] |