Name | Number of supported studies | Average coverage | |
---|---|---|---|
fibroblast | 42 studies | 40% ± 16% | |
smooth muscle cell | 32 studies | 52% ± 17% | |
pericyte | 25 studies | 34% ± 18% | |
astrocyte | 18 studies | 47% ± 21% | |
basal cell | 14 studies | 37% ± 11% | |
myofibroblast cell | 14 studies | 49% ± 12% | |
connective tissue cell | 13 studies | 33% ± 11% | |
oligodendrocyte precursor cell | 13 studies | 47% ± 20% | |
ciliated cell | 12 studies | 35% ± 11% | |
endothelial cell | 11 studies | 29% ± 14% | |
mast cell | 10 studies | 30% ± 15% | |
epithelial cell | 10 studies | 28% ± 18% | |
GABAergic neuron | 9 studies | 45% ± 21% | |
adipocyte | 7 studies | 35% ± 17% | |
type I pneumocyte | 6 studies | 39% ± 13% | |
interneuron | 6 studies | 45% ± 23% | |
neuron | 6 studies | 33% ± 18% | |
cardiac muscle cell | 6 studies | 90% ± 8% | |
podocyte | 5 studies | 45% ± 8% | |
glutamatergic neuron | 5 studies | 50% ± 18% | |
macrophage | 5 studies | 22% ± 9% | |
adventitial cell | 5 studies | 32% ± 8% | |
respiratory goblet cell | 5 studies | 27% ± 11% | |
endothelial cell of lymphatic vessel | 5 studies | 21% ± 6% | |
pancreatic A cell | 4 studies | 59% ± 20% | |
abnormal cell | 4 studies | 25% ± 5% | |
retinal pigment epithelial cell | 4 studies | 39% ± 13% | |
Mueller cell | 4 studies | 38% ± 5% | |
secretory cell | 4 studies | 20% ± 5% | |
endothelial cell of artery | 4 studies | 20% ± 2% | |
muscle cell | 4 studies | 57% ± 21% | |
myoepithelial cell | 4 studies | 57% ± 12% | |
ionocyte | 3 studies | 30% ± 7% | |
hepatic stellate cell | 3 studies | 39% ± 8% | |
progenitor cell | 3 studies | 27% ± 4% | |
GABAergic interneuron | 3 studies | 25% ± 4% | |
Purkinje cell | 3 studies | 53% ± 32% | |
glial cell | 3 studies | 25% ± 8% | |
squamous epithelial cell | 3 studies | 35% ± 20% | |
club cell | 3 studies | 25% ± 7% | |
mesothelial cell | 3 studies | 32% ± 11% | |
myeloid cell | 3 studies | 42% ± 12% | |
luminal hormone-sensing cell of mammary gland | 3 studies | 30% ± 12% | |
endothelial cell of vascular tree | 3 studies | 41% ± 30% | |
neural progenitor cell | 3 studies | 35% ± 23% | |
ependymal cell | 3 studies | 54% ± 12% | |
goblet cell | 3 studies | 37% ± 16% | |
transit amplifying cell | 3 studies | 28% ± 14% | |
parietal epithelial cell | 3 studies | 47% ± 3% | |
conventional dendritic cell | 3 studies | 19% ± 2% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 11 studies | 31% ± 15% | |
lung | 9 studies | 23% ± 4% | |
heart | 6 studies | 44% ± 16% | |
intestine | 5 studies | 20% ± 4% | |
prostate | 4 studies | 32% ± 8% | |
pancreas | 3 studies | 44% ± 12% | |
uterus | 3 studies | 32% ± 6% | |
breast | 3 studies | 25% ± 6% | |
adipose | 3 studies | 24% ± 3% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
uterus | 99% | 62703.88 | 169 / 170 | 96% | 70.18 | 440 / 459 |
lung | 94% | 21238.81 | 545 / 578 | 97% | 68.76 | 1119 / 1155 |
prostate | 93% | 32364.51 | 227 / 245 | 97% | 68.31 | 486 / 502 |
esophagus | 91% | 76771.54 | 1315 / 1445 | 97% | 95.05 | 178 / 183 |
breast | 86% | 13034.78 | 393 / 459 | 98% | 88.78 | 1101 / 1118 |
bladder | 100% | 77356.48 | 21 / 21 | 83% | 44.13 | 416 / 504 |
thymus | 87% | 12009.74 | 565 / 653 | 93% | 56.83 | 562 / 605 |
intestine | 85% | 58780.64 | 824 / 966 | 92% | 41.68 | 484 / 527 |
ovary | 94% | 17664.59 | 170 / 180 | 76% | 25.20 | 328 / 430 |
stomach | 60% | 24337.05 | 214 / 359 | 91% | 54.18 | 261 / 286 |
adrenal gland | 64% | 7603.24 | 165 / 258 | 79% | 27.31 | 182 / 230 |
kidney | 39% | 5527.07 | 35 / 89 | 85% | 33.55 | 766 / 901 |
skin | 66% | 10035.33 | 1195 / 1809 | 52% | 15.48 | 244 / 472 |
brain | 5% | 488.12 | 127 / 2642 | 97% | 39.22 | 681 / 705 |
ureter | 0% | 0 | 0 / 0 | 100% | 26.90 | 1 / 1 |
blood vessel | 100% | 75282.83 | 1333 / 1335 | 0% | 0 | 0 / 0 |
pancreas | 1% | 134.68 | 3 / 328 | 98% | 91.14 | 174 / 178 |
muscle | 95% | 18990.53 | 766 / 803 | 0% | 0 | 0 / 0 |
heart | 89% | 35298.83 | 767 / 861 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 89% | 50.33 | 40 / 45 |
adipose | 82% | 14419.67 | 987 / 1204 | 0% | 0 | 0 / 0 |
spleen | 74% | 10801.88 | 178 / 241 | 0% | 0 | 0 / 0 |
liver | 1% | 85.66 | 2 / 226 | 52% | 14.14 | 211 / 406 |
lymph node | 0% | 0 | 0 / 0 | 48% | 8.74 | 14 / 29 |
eye | 0% | 0 | 0 / 0 | 1% | 0.17 | 1 / 80 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
peripheral blood | 0% | 0 | 0 / 929 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0003382 | Biological process | epithelial cell morphogenesis |
GO_0007010 | Biological process | cytoskeleton organization |
GO_0030036 | Biological process | actin cytoskeleton organization |
GO_0007156 | Biological process | homophilic cell adhesion via plasma membrane adhesion molecules |
GO_0003334 | Biological process | keratinocyte development |
GO_0016477 | Biological process | cell migration |
GO_0007411 | Biological process | axon guidance |
GO_0070593 | Biological process | dendrite self-avoidance |
GO_0001726 | Cellular component | ruffle |
GO_0005886 | Cellular component | plasma membrane |
GO_0030018 | Cellular component | Z disc |
GO_0005739 | Cellular component | mitochondrion |
GO_0002102 | Cellular component | podosome |
GO_0005884 | Cellular component | actin filament |
GO_0005925 | Cellular component | focal adhesion |
GO_0001725 | Cellular component | stress fiber |
GO_0015629 | Cellular component | actin cytoskeleton |
GO_0005829 | Cellular component | cytosol |
GO_0030426 | Cellular component | growth cone |
GO_0060076 | Cellular component | excitatory synapse |
GO_0030424 | Cellular component | axon |
GO_0030027 | Cellular component | lamellipodium |
GO_0005634 | Cellular component | nucleus |
GO_0098632 | Molecular function | cell-cell adhesion mediator activity |
GO_0051371 | Molecular function | muscle alpha-actinin binding |
GO_0003779 | Molecular function | actin binding |
GO_0005515 | Molecular function | protein binding |
Gene name | PALLD |
Protein name | Palladin, cytoskeletal associated protein Palladin (SIH002) (Sarcoma antigen NY-SAR-77) Alternative protein PALLD |
Synonyms | hCG_2026123 CGI-151 KIAA0992 |
Description | FUNCTION: Cytoskeletal protein required for organization of normal actin cytoskeleton. Roles in establishing cell morphology, motility, cell adhesion and cell-extracellular matrix interactions in a variety of cell types. May function as a scaffolding molecule with the potential to influence both actin polymerization and the assembly of existing actin filaments into higher-order arrays. Binds to proteins that bind to either monomeric or filamentous actin. Localizes at sites where active actin remodeling takes place, such as lamellipodia and membrane ruffles. Different isoforms may have functional differences. Involved in the control of morphological and cytoskeletal changes associated with dendritic cell maturation. Involved in targeting ACTN to specific subcellular foci. . |
Accessions | A0A3B3ISX8 ENST00000704822.1 ENST00000510998.5 A0A994J7A4 ENST00000504519.5 ENST00000649826.1 ENST00000512127.5 [Q8WX93-8] F8WA26 ENST00000505667.6 [Q8WX93-9] D6RBH5 H0Y952 B2RTX2 D6R9Z5 ENST00000503457.1 Q8WX93 ENST00000261509.10 [Q8WX93-2] ENST00000507735.6 [Q8WX93-4] ENST00000511948.1 H0YA05 ENST00000513245.5 D6RBB1 D6R948 D6R9F5 L0R8B3 ENST00000393726.7 ENST00000503290.1 ENST00000508898.5 |