Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
lung | 100% | 5089.18 | 578 / 578 | 100% | 111.52 | 1155 / 1155 |
stomach | 100% | 4096.73 | 359 / 359 | 100% | 132.58 | 286 / 286 |
esophagus | 100% | 4878.71 | 1444 / 1445 | 100% | 132.66 | 183 / 183 |
breast | 100% | 4998.63 | 459 / 459 | 100% | 136.34 | 1117 / 1118 |
intestine | 100% | 4723.90 | 965 / 966 | 100% | 140.56 | 527 / 527 |
brain | 100% | 4388.94 | 2633 / 2642 | 100% | 88.81 | 705 / 705 |
bladder | 100% | 5111.76 | 21 / 21 | 100% | 114.61 | 502 / 504 |
uterus | 100% | 4747.08 | 170 / 170 | 100% | 123.43 | 457 / 459 |
ovary | 100% | 5319.20 | 180 / 180 | 100% | 93.11 | 428 / 430 |
pancreas | 100% | 3001.99 | 328 / 328 | 99% | 81.58 | 177 / 178 |
prostate | 100% | 4876.28 | 245 / 245 | 99% | 117.54 | 499 / 502 |
skin | 100% | 6385.14 | 1809 / 1809 | 99% | 112.37 | 468 / 472 |
thymus | 100% | 4892.35 | 653 / 653 | 99% | 73.58 | 596 / 605 |
kidney | 100% | 3333.04 | 89 / 89 | 94% | 53.86 | 844 / 901 |
adrenal gland | 100% | 3784.02 | 258 / 258 | 92% | 65.76 | 211 / 230 |
liver | 100% | 3017.09 | 226 / 226 | 91% | 45.84 | 371 / 406 |
lymph node | 0% | 0 | 0 / 0 | 100% | 135.88 | 29 / 29 |
muscle | 100% | 5611.67 | 803 / 803 | 0% | 0 | 0 / 0 |
spleen | 100% | 4420.89 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 125.70 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 52.81 | 1 / 1 |
blood vessel | 100% | 4172.73 | 1334 / 1335 | 0% | 0 | 0 / 0 |
adipose | 100% | 5697.76 | 1203 / 1204 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 98% | 87.48 | 78 / 80 |
heart | 95% | 2839.14 | 822 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 61% | 3743.45 | 566 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0014029 | Biological process | neural crest formation |
GO_0000278 | Biological process | mitotic cell cycle |
GO_0006364 | Biological process | rRNA processing |
GO_0014032 | Biological process | neural crest cell development |
GO_0007000 | Biological process | nucleolus organization |
GO_0006417 | Biological process | regulation of translation |
GO_0015030 | Cellular component | Cajal body |
GO_0005730 | Cellular component | nucleolus |
GO_0001650 | Cellular component | fibrillar center |
GO_0005654 | Cellular component | nucleoplasm |
GO_0005737 | Cellular component | cytoplasm |
GO_0005525 | Molecular function | GTP binding |
GO_0046982 | Molecular function | protein heterodimerization activity |
GO_0005524 | Molecular function | ATP binding |
GO_0030674 | Molecular function | protein-macromolecule adaptor activity |
GO_0005515 | Molecular function | protein binding |
GO_0140678 | Molecular function | molecular function inhibitor activity |
GO_0003723 | Molecular function | RNA binding |
Gene name | NOLC1 |
Protein name | NOLC1 protein (Nucleolar and coiled-body phosphoprotein 1, isoform CRA_a) (cDNA FLJ32193 fis, clone PLACE6002345, highly similar to Nucleolar phosphoprotein p130) Nucleolar and coiled-body phosphoprotein 1 Nucleolar and coiled-body phosphoprotein 1 (140 kDa nucleolar phosphoprotein) (Nopp140) (Hepatitis C virus NS5A-transactivated protein 13) (HCV NS5A-transactivated protein 13) (Nucleolar 130 kDa protein) (Nucleolar phosphoprotein p130) |
Synonyms | hCG_25636 NS5ATP13 KIAA0035 |
Description | FUNCTION: Nucleolar protein that acts as a regulator of RNA polymerase I by connecting RNA polymerase I with enzymes responsible for ribosomal processing and modification . Required for neural crest specification: following monoubiquitination by the BCR(KBTBD8) complex, associates with TCOF1 and acts as a platform to connect RNA polymerase I with enzymes responsible for ribosomal processing and modification, leading to remodel the translational program of differentiating cells in favor of neural crest specification . Involved in nucleologenesis, possibly by playing a role in the maintenance of the fundamental structure of the fibrillar center and dense fibrillar component in the nucleolus . It has intrinsic GTPase and ATPase activities . . |
Accessions | S4R341 Q14978 ENST00000476468.5 ENST00000405356.5 [Q14978-2] ENST00000488254.6 [Q14978-3] ENST00000605788.6 [Q14978-1] S4R3C2 ENST00000603946.5 A0A0A0MRM9 ENST00000464969.6 S4R402 ENST00000461421.5 Q96J17 ENST00000370007.5 S4R349 |