Name | Number of supported studies | Average coverage | |
---|---|---|---|
oligodendrocyte precursor cell | 12 studies | 50% ± 17% | |
astrocyte | 12 studies | 28% ± 13% | |
glutamatergic neuron | 11 studies | 39% ± 17% | |
oligodendrocyte | 10 studies | 25% ± 9% | |
microglial cell | 7 studies | 22% ± 8% | |
GABAergic neuron | 6 studies | 42% ± 16% | |
endothelial cell | 4 studies | 42% ± 13% | |
interneuron | 4 studies | 41% ± 6% | |
neuron | 3 studies | 33% ± 14% | |
GABAergic interneuron | 3 studies | 37% ± 13% | |
GABAergic amacrine cell | 3 studies | 25% ± 6% | |
glycinergic amacrine cell | 3 studies | 23% ± 5% | |
amacrine cell | 3 studies | 27% ± 4% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 15 studies | 29% ± 14% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
prostate | 100% | 812.94 | 245 / 245 | 98% | 5.27 | 490 / 502 |
brain | 72% | 736.35 | 1914 / 2642 | 57% | 7.02 | 402 / 705 |
esophagus | 65% | 385.36 | 942 / 1445 | 57% | 2.24 | 104 / 183 |
kidney | 74% | 221.02 | 66 / 89 | 42% | 2.00 | 378 / 901 |
bladder | 67% | 426.57 | 14 / 21 | 41% | 1.99 | 209 / 504 |
ureter | 0% | 0 | 0 / 0 | 100% | 6.46 | 1 / 1 |
lung | 62% | 141.99 | 358 / 578 | 37% | 1.58 | 429 / 1155 |
adrenal gland | 61% | 301.57 | 158 / 258 | 34% | 2.72 | 79 / 230 |
thymus | 66% | 221.32 | 433 / 653 | 29% | 1.06 | 173 / 605 |
skin | 66% | 321.78 | 1189 / 1809 | 22% | 1.02 | 102 / 472 |
liver | 52% | 79.70 | 118 / 226 | 30% | 0.73 | 122 / 406 |
intestine | 57% | 335.36 | 546 / 966 | 21% | 0.54 | 112 / 527 |
pancreas | 23% | 36.97 | 76 / 328 | 46% | 1.38 | 81 / 178 |
stomach | 36% | 177.24 | 128 / 359 | 31% | 0.82 | 90 / 286 |
adipose | 67% | 225.06 | 803 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 65% | 345.02 | 870 / 1335 | 0% | 0 | 0 / 0 |
breast | 61% | 240.55 | 282 / 459 | 1% | 0.09 | 12 / 1118 |
tonsil | 0% | 0 | 0 / 0 | 62% | 3.06 | 28 / 45 |
heart | 27% | 47.74 | 236 / 861 | 0% | 0 | 0 / 0 |
spleen | 24% | 33.32 | 58 / 241 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 21% | 0.40 | 6 / 29 |
peripheral blood | 12% | 92.81 | 108 / 929 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 10% | 0.17 | 8 / 80 |
muscle | 9% | 12.37 | 74 / 803 | 0% | 0 | 0 / 0 |
uterus | 0% | 0 | 0 / 170 | 6% | 0.40 | 28 / 459 |
ovary | 2% | 2.32 | 3 / 180 | 0% | 0 | 0 / 430 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0097104 | Biological process | postsynaptic membrane assembly |
GO_0050804 | Biological process | modulation of chemical synaptic transmission |
GO_0007612 | Biological process | learning |
GO_0048488 | Biological process | synaptic vesicle endocytosis |
GO_0071625 | Biological process | vocalization behavior |
GO_0007268 | Biological process | chemical synaptic transmission |
GO_0099054 | Biological process | presynapse assembly |
GO_0035176 | Biological process | social behavior |
GO_0007158 | Biological process | neuron cell-cell adhesion |
GO_0097105 | Biological process | presynaptic membrane assembly |
GO_0098839 | Cellular component | postsynaptic density membrane |
GO_0098793 | Cellular component | presynapse |
GO_0098985 | Cellular component | asymmetric, glutamatergic, excitatory synapse |
GO_0005886 | Cellular component | plasma membrane |
GO_0016020 | Cellular component | membrane |
GO_0009986 | Cellular component | cell surface |
GO_0045202 | Cellular component | synapse |
GO_0099634 | Cellular component | postsynaptic specialization membrane |
GO_0098983 | Cellular component | symmetric, GABA-ergic, inhibitory synapse |
GO_0038023 | Molecular function | signaling receptor activity |
GO_0042043 | Molecular function | neurexin family protein binding |
GO_0097110 | Molecular function | scaffold protein binding |
GO_0050839 | Molecular function | cell adhesion molecule binding |
GO_0005515 | Molecular function | protein binding |
Gene name | NLGN4Y |
Protein name | Neuroligin 4 Y-linked (Neuroligin 4, Y-linked, isoform CRA_c) Neuroligin 4 Y-linked Neuroligin-4, Y-linked (Neuroligin Y) Neuroligin 4 Y-linked (cDNA FLJ56436, highly similar to Neuroligin-4, Y linked) |
Synonyms | KIAA0951 hCG_1988457 |
Description | FUNCTION: Cell surface protein involved in cell-cell-interactions via its interactions with neurexin family members. . |
Accessions | H0Y7G6 A0A2R8YDT7 ENST00000355905.6 [Q8NFZ3-1] ENST00000339174.9 [Q8NFZ3-1] ENST00000382868.5 ENST00000643089.1 B4DHI3 ENST00000645399.1 ENST00000684976.1 Q8NFZ3 A6NMU8 ENST00000382872.5 [Q8NFZ3-2] ENST00000413217.1 |