Name | Number of supported studies | Average coverage | |
---|---|---|---|
plasmacytoid dendritic cell | 5 studies | 21% ± 3% | |
classical monocyte | 4 studies | 29% ± 7% | |
epithelial cell | 4 studies | 36% ± 15% | |
fibroblast | 4 studies | 21% ± 5% | |
non-classical monocyte | 3 studies | 25% ± 8% | |
endothelial cell | 3 studies | 21% ± 7% | |
pericyte | 3 studies | 18% ± 3% | |
plasma cell | 3 studies | 22% ± 6% | |
ciliated cell | 3 studies | 24% ± 5% | |
abnormal cell | 3 studies | 25% ± 5% | |
macrophage | 3 studies | 26% ± 2% | |
dendritic cell | 3 studies | 32% ± 12% | |
goblet cell | 3 studies | 19% ± 2% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
intestine | 3 studies | 20% ± 4% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 4685.89 | 1445 / 1445 | 100% | 134.65 | 183 / 183 |
lung | 100% | 6367.64 | 578 / 578 | 100% | 141.08 | 1155 / 1155 |
ovary | 100% | 6086.50 | 180 / 180 | 100% | 132.11 | 430 / 430 |
prostate | 100% | 4518.50 | 245 / 245 | 100% | 119.50 | 502 / 502 |
skin | 100% | 7166.02 | 1809 / 1809 | 100% | 170.41 | 472 / 472 |
stomach | 100% | 4674.67 | 359 / 359 | 100% | 112.06 | 286 / 286 |
breast | 100% | 6129.24 | 459 / 459 | 100% | 174.45 | 1117 / 1118 |
intestine | 100% | 5478.43 | 966 / 966 | 100% | 107.22 | 525 / 527 |
thymus | 100% | 6575.21 | 653 / 653 | 100% | 138.56 | 602 / 605 |
pancreas | 100% | 4273.64 | 328 / 328 | 99% | 109.40 | 177 / 178 |
kidney | 100% | 5325.84 | 89 / 89 | 99% | 112.46 | 894 / 901 |
bladder | 100% | 5228.86 | 21 / 21 | 99% | 124.37 | 500 / 504 |
uterus | 100% | 4874.24 | 170 / 170 | 99% | 120.44 | 455 / 459 |
brain | 99% | 3017.59 | 2620 / 2642 | 100% | 111.18 | 704 / 705 |
adrenal gland | 100% | 5538.81 | 258 / 258 | 98% | 108.17 | 226 / 230 |
liver | 100% | 2892.84 | 225 / 226 | 98% | 95.40 | 396 / 406 |
adipose | 100% | 6056.72 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 4910.26 | 1335 / 1335 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 100% | 114.49 | 80 / 80 |
spleen | 100% | 6566.23 | 241 / 241 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 100% | 51.99 | 1 / 1 |
muscle | 100% | 3283.23 | 800 / 803 | 0% | 0 | 0 / 0 |
peripheral blood | 99% | 6076.53 | 922 / 929 | 0% | 0 | 0 / 0 |
heart | 99% | 4342.35 | 854 / 861 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 98% | 102.55 | 44 / 45 |
lymph node | 0% | 0 | 0 / 0 | 97% | 67.25 | 28 / 29 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0050673 | Biological process | epithelial cell proliferation |
GO_0007220 | Biological process | Notch receptor processing |
GO_0002262 | Biological process | myeloid cell homeostasis |
GO_0031293 | Biological process | membrane protein intracellular domain proteolysis |
GO_1900271 | Biological process | regulation of long-term synaptic potentiation |
GO_0007219 | Biological process | Notch signaling pathway |
GO_0042098 | Biological process | T cell proliferation |
GO_0007611 | Biological process | learning or memory |
GO_0016485 | Biological process | protein processing |
GO_1990926 | Biological process | short-term synaptic potentiation |
GO_0022010 | Biological process | central nervous system myelination |
GO_0071277 | Biological process | cellular response to calcium ion |
GO_0034205 | Biological process | amyloid-beta formation |
GO_0051402 | Biological process | neuron apoptotic process |
GO_0042983 | Biological process | amyloid precursor protein biosynthetic process |
GO_0006508 | Biological process | proteolysis |
GO_0030534 | Biological process | adult behavior |
GO_0021549 | Biological process | cerebellum development |
GO_0042986 | Biological process | positive regulation of amyloid precursor protein biosynthetic process |
GO_0042982 | Biological process | amyloid precursor protein metabolic process |
GO_0007215 | Biological process | glutamate receptor signaling pathway |
GO_0007212 | Biological process | G protein-coupled dopamine receptor signaling pathway |
GO_0010950 | Biological process | positive regulation of endopeptidase activity |
GO_0042987 | Biological process | amyloid precursor protein catabolic process |
GO_0006509 | Biological process | membrane protein ectodomain proteolysis |
GO_0070765 | Cellular component | gamma-secretase complex |
GO_0005886 | Cellular component | plasma membrane |
GO_0016020 | Cellular component | membrane |
GO_0005789 | Cellular component | endoplasmic reticulum membrane |
GO_0005769 | Cellular component | early endosome |
GO_0035577 | Cellular component | azurophil granule membrane |
GO_0042383 | Cellular component | sarcolemma |
GO_0070062 | Cellular component | extracellular exosome |
GO_0005794 | Cellular component | Golgi apparatus |
GO_0042734 | Cellular component | presynaptic membrane |
GO_0005925 | Cellular component | focal adhesion |
GO_0000139 | Cellular component | Golgi membrane |
GO_0005783 | Cellular component | endoplasmic reticulum |
GO_0008021 | Cellular component | synaptic vesicle |
GO_0010008 | Cellular component | endosome membrane |
GO_0042470 | Cellular component | melanosome |
GO_0005765 | Cellular component | lysosomal membrane |
GO_0042500 | Molecular function | aspartic endopeptidase activity, intramembrane cleaving |
GO_0070851 | Molecular function | growth factor receptor binding |
GO_0030674 | Molecular function | protein-macromolecule adaptor activity |
GO_0051117 | Molecular function | ATPase binding |
GO_0005515 | Molecular function | protein binding |
Gene name | NCSTN |
Protein name | Nicastrin |
Synonyms | KIAA0253 UNQ1874/PRO4317 |
Description | FUNCTION: Essential subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors and APP (amyloid-beta precursor protein) . The gamma-secretase complex plays a role in Notch and Wnt signaling cascades and regulation of downstream processes via its role in processing key regulatory proteins, and by regulating cytosolic CTNNB1 levels. . |
Accessions | ENST00000294785.10 [Q92542-1] A0A8V8TNU8 ENST00000424645.6 A0A8V8TPR8 H0Y6T7 A0A8V8TNI3 ENST00000699549.1 Q92542 ENST00000437169.5 ENST00000699530.1 ENST00000467837.5 Q5T210 A0A2R8YCK1 ENST00000699532.1 Q5T209 ENST00000699554.1 A0A8V8TNV3 ENST00000459963.6 ENST00000699543.1 ENST00000699540.1 ENST00000699538.1 A0A8V8TNV7 ENST00000438008.5 A0A2R8YE20 ENST00000368063.6 A0A8V8TNI9 ENST00000699546.1 ENST00000699553.1 H0Y3Z4 ENST00000699528.1 A0A8V8TPQ8 ENST00000421914.6 A0A8V8TNC8 Q5T211 A0A2U3TZL9 ENST00000699541.1 ENST00000699527.1 ENST00000435149.1 A0A8V8TQ51 Q5T205 ENST00000424754.5 ENST00000699545.1 A0A8V8TQ61 |