Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 22 studies | 32% ± 13% | |
macrophage | 12 studies | 38% ± 16% | |
microglial cell | 12 studies | 41% ± 13% | |
astrocyte | 11 studies | 34% ± 14% | |
fibroblast | 10 studies | 27% ± 10% | |
oligodendrocyte | 10 studies | 28% ± 10% | |
type I pneumocyte | 9 studies | 40% ± 18% | |
glutamatergic neuron | 9 studies | 44% ± 26% | |
oligodendrocyte precursor cell | 9 studies | 29% ± 12% | |
myeloid cell | 9 studies | 32% ± 12% | |
epithelial cell | 9 studies | 38% ± 19% | |
adipocyte | 9 studies | 35% ± 8% | |
GABAergic neuron | 8 studies | 42% ± 23% | |
dendritic cell | 8 studies | 32% ± 12% | |
ciliated cell | 8 studies | 30% ± 11% | |
endothelial cell of lymphatic vessel | 7 studies | 34% ± 12% | |
type II pneumocyte | 7 studies | 41% ± 18% | |
interneuron | 6 studies | 40% ± 24% | |
mast cell | 6 studies | 24% ± 7% | |
basal cell | 6 studies | 32% ± 22% | |
T cell | 6 studies | 23% ± 9% | |
monocyte | 6 studies | 37% ± 12% | |
smooth muscle cell | 6 studies | 23% ± 5% | |
neuron | 5 studies | 37% ± 18% | |
B cell | 5 studies | 25% ± 9% | |
cardiac muscle cell | 5 studies | 27% ± 6% | |
pericyte | 5 studies | 29% ± 13% | |
respiratory goblet cell | 5 studies | 35% ± 14% | |
club cell | 5 studies | 44% ± 16% | |
classical monocyte | 4 studies | 21% ± 5% | |
Mueller cell | 4 studies | 33% ± 11% | |
GABAergic interneuron | 3 studies | 25% ± 5% | |
granule cell | 3 studies | 27% ± 5% | |
plasma cell | 3 studies | 29% ± 5% | |
squamous epithelial cell | 3 studies | 38% ± 18% | |
CD4-positive, alpha-beta T cell | 3 studies | 18% ± 2% | |
mesothelial cell | 3 studies | 25% ± 3% | |
mononuclear phagocyte | 3 studies | 31% ± 11% | |
vein endothelial cell | 3 studies | 34% ± 21% | |
amacrine cell | 3 studies | 21% ± 6% | |
retina horizontal cell | 3 studies | 22% ± 7% | |
endothelial cell of vascular tree | 3 studies | 33% ± 18% | |
hepatocyte | 3 studies | 48% ± 25% | |
abnormal cell | 3 studies | 30% ± 16% | |
neural progenitor cell | 3 studies | 21% ± 3% | |
alveolar macrophage | 3 studies | 47% ± 14% | |
natural killer cell | 3 studies | 22% ± 4% | |
lymphocyte | 3 studies | 34% ± 11% | |
goblet cell | 3 studies | 42% ± 27% | |
transit amplifying cell | 3 studies | 44% ± 33% | |
mucus secreting cell | 3 studies | 34% ± 2% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
bladder | 100% | 4062.38 | 21 / 21 | 100% | 27.92 | 504 / 504 |
breast | 100% | 4282.88 | 459 / 459 | 100% | 30.69 | 1118 / 1118 |
esophagus | 100% | 4529.60 | 1445 / 1445 | 100% | 32.36 | 183 / 183 |
intestine | 100% | 4370.82 | 966 / 966 | 100% | 28.68 | 527 / 527 |
ovary | 100% | 3769.66 | 180 / 180 | 100% | 27.14 | 430 / 430 |
prostate | 100% | 4968.78 | 245 / 245 | 100% | 28.57 | 502 / 502 |
stomach | 100% | 4356.50 | 359 / 359 | 100% | 28.72 | 286 / 286 |
lung | 100% | 6005.32 | 578 / 578 | 100% | 27.12 | 1154 / 1155 |
thymus | 100% | 5567.81 | 653 / 653 | 100% | 23.21 | 604 / 605 |
uterus | 100% | 3964.60 | 170 / 170 | 100% | 25.15 | 458 / 459 |
kidney | 100% | 3557.09 | 89 / 89 | 99% | 17.42 | 896 / 901 |
pancreas | 100% | 2426.27 | 328 / 328 | 99% | 22.76 | 177 / 178 |
skin | 100% | 5566.72 | 1809 / 1809 | 99% | 18.47 | 469 / 472 |
brain | 99% | 2830.84 | 2621 / 2642 | 100% | 17.60 | 703 / 705 |
adrenal gland | 100% | 5474.71 | 258 / 258 | 99% | 16.24 | 227 / 230 |
liver | 100% | 2107.50 | 226 / 226 | 96% | 11.84 | 390 / 406 |
adipose | 100% | 4172.67 | 1204 / 1204 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 28.48 | 29 / 29 |
muscle | 100% | 5558.35 | 803 / 803 | 0% | 0 | 0 / 0 |
spleen | 100% | 5616.23 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 23.08 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 16.43 | 1 / 1 |
blood vessel | 100% | 3420.18 | 1334 / 1335 | 0% | 0 | 0 / 0 |
heart | 99% | 3766.04 | 850 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 97% | 4352.29 | 901 / 929 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 96% | 14.96 | 77 / 80 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_1905870 | Biological process | positive regulation of 3'-UTR-mediated mRNA stabilization |
GO_0045727 | Biological process | positive regulation of translation |
GO_0005730 | Cellular component | nucleolus |
GO_0005829 | Cellular component | cytosol |
GO_0010494 | Cellular component | cytoplasmic stress granule |
GO_0016020 | Cellular component | membrane |
GO_0003730 | Molecular function | mRNA 3'-UTR binding |
GO_0005515 | Molecular function | protein binding |
GO_0003723 | Molecular function | RNA binding |
Gene name | LARP4B |
Protein name | La ribonucleoprotein 4B La-related protein 4B (La ribonucleoprotein domain family member 4B) (La ribonucleoprotein domain family member 5) (La-related protein 5) |
Synonyms | KIAA0217 LARP5 |
Description | FUNCTION: Stimulates mRNA translation. . |
Accessions | ENST00000476529.5 ENST00000316157.8 H0Y641 ENST00000614908.5 ENST00000448368.5 ENST00000689323.1 Q92615 B5MCU2 A0A087X183 ENST00000440895.2 ENST00000690516.1 V9GYI5 ENST00000690211.1 A0A8I5KVU2 ENST00000688365.1 H0Y4V9 A0A8I5KSR3 ENST00000406525.6 ENST00000412411.1 A0A8I5KUR6 X6RCG6 A0A8I5KWN8 |