Name | Number of supported studies | Average coverage | |
---|---|---|---|
fibroblast | 6 studies | 23% ± 8% | |
ciliated cell | 6 studies | 28% ± 8% | |
endothelial cell | 5 studies | 27% ± 10% | |
epithelial cell | 5 studies | 39% ± 19% | |
hematopoietic precursor cell | 4 studies | 25% ± 7% | |
CD4-positive, alpha-beta T cell | 4 studies | 20% ± 2% | |
classical monocyte | 4 studies | 23% ± 6% | |
natural killer cell | 4 studies | 19% ± 2% | |
plasmacytoid dendritic cell | 4 studies | 23% ± 6% | |
conventional dendritic cell | 3 studies | 28% ± 10% | |
naive thymus-derived CD8-positive, alpha-beta T cell | 3 studies | 17% ± 2% | |
non-classical monocyte | 3 studies | 23% ± 6% | |
pericyte | 3 studies | 21% ± 4% | |
type I pneumocyte | 3 studies | 24% ± 5% | |
CD8-positive, alpha-beta T cell | 3 studies | 18% ± 1% | |
dendritic cell | 3 studies | 36% ± 9% | |
intestinal crypt stem cell | 3 studies | 19% ± 1% | |
basal cell | 3 studies | 33% ± 12% | |
connective tissue cell | 3 studies | 21% ± 4% | |
hematopoietic stem cell | 3 studies | 19% ± 4% | |
memory B cell | 3 studies | 15% ± 0% | |
regulatory T cell | 3 studies | 17% ± 2% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
adrenal gland | 100% | 3344.72 | 258 / 258 | 100% | 71.53 | 230 / 230 |
esophagus | 100% | 1441.59 | 1445 / 1445 | 100% | 60.34 | 183 / 183 |
liver | 100% | 1601.31 | 226 / 226 | 100% | 74.08 | 406 / 406 |
ovary | 100% | 1658.60 | 180 / 180 | 100% | 99.09 | 430 / 430 |
pancreas | 100% | 1745.08 | 328 / 328 | 100% | 72.66 | 178 / 178 |
prostate | 100% | 1687.55 | 245 / 245 | 100% | 92.29 | 502 / 502 |
skin | 100% | 2247.39 | 1809 / 1809 | 100% | 98.73 | 472 / 472 |
stomach | 100% | 1864.77 | 359 / 359 | 100% | 77.27 | 286 / 286 |
uterus | 100% | 1864.93 | 170 / 170 | 100% | 76.27 | 459 / 459 |
thymus | 100% | 1390.83 | 653 / 653 | 100% | 74.83 | 604 / 605 |
intestine | 100% | 1837.41 | 966 / 966 | 100% | 84.40 | 526 / 527 |
bladder | 100% | 1839.33 | 21 / 21 | 100% | 85.27 | 503 / 504 |
breast | 100% | 2160.54 | 459 / 459 | 100% | 83.22 | 1113 / 1118 |
kidney | 100% | 1450.29 | 89 / 89 | 99% | 53.67 | 895 / 901 |
lung | 99% | 1428.01 | 574 / 578 | 100% | 63.68 | 1155 / 1155 |
brain | 99% | 991.48 | 2614 / 2642 | 100% | 67.42 | 705 / 705 |
adipose | 100% | 2250.67 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 1485.90 | 1335 / 1335 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 100% | 96.16 | 80 / 80 |
lymph node | 0% | 0 | 0 / 0 | 100% | 93.47 | 29 / 29 |
spleen | 100% | 1378.28 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 68.33 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 67.01 | 1 / 1 |
muscle | 100% | 1659.86 | 801 / 803 | 0% | 0 | 0 / 0 |
heart | 98% | 1073.67 | 841 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 93% | 1232.46 | 860 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0007029 | Biological process | endoplasmic reticulum organization |
GO_1990266 | Biological process | neutrophil migration |
GO_0015031 | Biological process | protein transport |
GO_0050832 | Biological process | defense response to fungus |
GO_0002446 | Biological process | neutrophil mediated immunity |
GO_0016192 | Biological process | vesicle-mediated transport |
GO_0061179 | Biological process | negative regulation of insulin secretion involved in cellular response to glucose stimulus |
GO_0038158 | Biological process | granulocyte colony-stimulating factor signaling pathway |
GO_0006887 | Biological process | exocytosis |
GO_0030223 | Biological process | neutrophil differentiation |
GO_0005783 | Cellular component | endoplasmic reticulum |
GO_0005789 | Cellular component | endoplasmic reticulum membrane |
GO_0005515 | Molecular function | protein binding |
Gene name | JAGN1 |
Protein name | Protein jagunal homolog 1 |
Synonyms | |
Description | FUNCTION: Endoplasmic reticulum transmembrane protein involved in vesicle-mediated transport, which is required for neutrophil function. Required for vesicle-mediated transport; it is however unclear whether it is involved in early secretory pathway or intracellular protein transport. Acts as a regulator of neutrophil function, probably via its role in vesicle-mediated transport: required for defense against fungal pathogens and for granulocyte colony-stimulating factor (GM-CSF) signaling pathway; possibly by regulating glycosylation and/or targeting of proteins contributing to the viability and migration of neutrophils. . |
Accessions | Q8N5M9 A0A3B3ITE9 ENST00000647897.1 ENST00000489724.2 |