Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 9894.48 | 1445 / 1445 | 100% | 25.27 | 183 / 183 |
ovary | 100% | 11293.48 | 180 / 180 | 100% | 60.35 | 430 / 430 |
thymus | 100% | 11492.59 | 653 / 653 | 100% | 50.96 | 605 / 605 |
uterus | 100% | 13312.01 | 170 / 170 | 100% | 35.64 | 459 / 459 |
prostate | 100% | 10637.18 | 245 / 245 | 100% | 23.37 | 500 / 502 |
breast | 100% | 12583.27 | 459 / 459 | 99% | 30.17 | 1111 / 1118 |
lung | 100% | 14846.25 | 578 / 578 | 99% | 27.98 | 1145 / 1155 |
intestine | 100% | 8942.25 | 963 / 966 | 99% | 21.31 | 523 / 527 |
adrenal gland | 100% | 13005.51 | 258 / 258 | 99% | 24.26 | 227 / 230 |
stomach | 100% | 5884.26 | 358 / 359 | 99% | 22.43 | 283 / 286 |
bladder | 100% | 11827.10 | 21 / 21 | 99% | 31.18 | 497 / 504 |
kidney | 100% | 8953.58 | 89 / 89 | 98% | 27.96 | 886 / 901 |
skin | 100% | 10000.63 | 1809 / 1809 | 98% | 22.40 | 461 / 472 |
pancreas | 83% | 2416.93 | 273 / 328 | 99% | 38.44 | 177 / 178 |
brain | 84% | 2301.20 | 2216 / 2642 | 99% | 16.75 | 696 / 705 |
adipose | 100% | 13164.35 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 10176.71 | 1335 / 1335 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 73.44 | 29 / 29 |
spleen | 100% | 12853.27 | 241 / 241 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 100% | 23.51 | 1 / 1 |
heart | 100% | 5996.40 | 857 / 861 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 98% | 23.85 | 44 / 45 |
eye | 0% | 0 | 0 / 0 | 98% | 21.22 | 78 / 80 |
peripheral blood | 94% | 5783.74 | 870 / 929 | 0% | 0 | 0 / 0 |
muscle | 83% | 2327.39 | 668 / 803 | 0% | 0 | 0 / 0 |
liver | 18% | 432.87 | 41 / 226 | 53% | 10.26 | 215 / 406 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0007043 | Biological process | cell-cell junction assembly |
GO_0016925 | Biological process | protein sumoylation |
GO_0032703 | Biological process | negative regulation of interleukin-2 production |
GO_0050684 | Biological process | regulation of mRNA processing |
GO_0006476 | Biological process | protein deacetylation |
GO_0001570 | Biological process | vasculogenesis |
GO_0000122 | Biological process | negative regulation of transcription by RNA polymerase II |
GO_0006338 | Biological process | chromatin remodeling |
GO_1901223 | Biological process | negative regulation of non-canonical NF-kappaB signal transduction |
GO_0090050 | Biological process | positive regulation of cell migration involved in sprouting angiogenesis |
GO_0045668 | Biological process | negative regulation of osteoblast differentiation |
GO_0005654 | Cellular component | nucleoplasm |
GO_0005829 | Cellular component | cytosol |
GO_0005737 | Cellular component | cytoplasm |
GO_0005634 | Cellular component | nucleus |
GO_0005080 | Molecular function | protein kinase C binding |
GO_0033558 | Molecular function | protein lysine deacetylase activity |
GO_0019789 | Molecular function | SUMO transferase activity |
GO_0140297 | Molecular function | DNA-binding transcription factor binding |
GO_0003682 | Molecular function | chromatin binding |
GO_0004407 | Molecular function | histone deacetylase activity |
GO_0019901 | Molecular function | protein kinase binding |
GO_0071889 | Molecular function | 14-3-3 protein binding |
GO_0003714 | Molecular function | transcription corepressor activity |
GO_0046872 | Molecular function | metal ion binding |
GO_0005515 | Molecular function | protein binding |
Gene name | HDAC7 |
Protein name | Histone deacetylase 7 (HD7) (EC 3.5.1.98) (Histone deacetylase 7A) (HD7a) Histone deacetylase (EC 3.5.1.98) histone deacetylase (EC 3.5.1.98) Histone deacetylase 7 |
Synonyms | HDAC7A |
Description | FUNCTION: Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes. Involved in muscle maturation by repressing transcription of myocyte enhancer factors such as MEF2A, MEF2B and MEF2C. During muscle differentiation, it shuttles into the cytoplasm, allowing the expression of myocyte enhancer factors (By similarity). May be involved in Epstein-Barr virus (EBV) latency, possibly by repressing the viral BZLF1 gene. Positively regulates the transcriptional repressor activity of FOXP3 . Serves as a corepressor of RARA, causing its deacetylation and inhibition of RARE DNA element binding . In association with RARA, plays a role in the repression of microRNA-10a and thereby in the inflammatory response . . FUNCTION: Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. . |
Accessions | ENST00000552960.5 [Q8WUI4-6] C9J102 C9JZ79 ENST00000488927.2 ENST00000440293.5 ENST00000447463.5 ENST00000548080.5 H0YI15 ENST00000427332.6 [Q8WUI4-1] ENST00000445237.2 ENST00000417902.5 C9JNI4 ENST00000548938.5 ENST00000450805.5 F8VWY3 C9JEB6 C9JAH2 ENST00000425451.2 A0A087WYQ4 ENST00000421231.5 C9JF80 ENST00000434070.5 C9JKN3 H0YH91 C9JVZ1 ENST00000080059.12 [Q8WUI4-5] ENST00000433685.5 Q8WUI4 ENST00000422254.5 ENST00000417107.5 ENST00000430670.5 ENST00000477203.6 J3KPH8 C9JGF5 H0YHJ5 ENST00000485796.5 C9JH46 ENST00000354334.7 [Q8WUI4-7] C9JBC2 ENST00000380610.8 H0YI41 ENST00000547259.1 |