Name | Number of supported studies | Average coverage | |
---|---|---|---|
epithelial cell | 11 studies | 31% ± 13% | |
platelet | 10 studies | 67% ± 21% | |
B cell | 9 studies | 22% ± 6% | |
plasma cell | 6 studies | 27% ± 8% | |
basal cell | 6 studies | 19% ± 5% | |
ciliated cell | 6 studies | 30% ± 13% | |
endothelial cell | 6 studies | 19% ± 4% | |
naive B cell | 6 studies | 21% ± 5% | |
enteroendocrine cell | 5 studies | 22% ± 7% | |
precursor B cell | 5 studies | 55% ± 20% | |
fibroblast | 5 studies | 19% ± 4% | |
microglial cell | 5 studies | 37% ± 15% | |
plasmacytoid dendritic cell | 5 studies | 25% ± 10% | |
squamous epithelial cell | 4 studies | 40% ± 19% | |
abnormal cell | 4 studies | 33% ± 24% | |
luminal cell of prostate epithelium | 4 studies | 30% ± 6% | |
astrocyte | 4 studies | 20% ± 5% | |
dendritic cell | 4 studies | 23% ± 6% | |
leukocyte | 4 studies | 39% ± 15% | |
oligodendrocyte | 4 studies | 32% ± 8% | |
CD8-positive, alpha-beta T cell | 3 studies | 27% ± 13% | |
non-classical monocyte | 3 studies | 22% ± 2% | |
progenitor cell | 3 studies | 19% ± 3% | |
epithelial cell of proximal tubule | 3 studies | 19% ± 4% | |
megakaryocyte | 3 studies | 64% ± 5% | |
brush cell | 3 studies | 34% ± 2% | |
club cell | 3 studies | 28% ± 4% | |
CD4-positive, alpha-beta T cell | 3 studies | 25% ± 10% | |
immature B cell | 3 studies | 42% ± 14% | |
natural killer cell | 3 studies | 22% ± 5% | |
pro-B cell | 3 studies | 53% ± 12% | |
type I pneumocyte | 3 studies | 27% ± 10% | |
type II pneumocyte | 3 studies | 28% ± 8% | |
myeloid cell | 3 studies | 22% ± 9% | |
rod bipolar cell | 3 studies | 42% ± 11% | |
secretory cell | 3 studies | 23% ± 5% | |
enterocyte | 3 studies | 17% ± 1% | |
group 3 innate lymphoid cell | 3 studies | 29% ± 7% | |
macrophage | 3 studies | 33% ± 11% | |
renal principal cell | 3 studies | 21% ± 4% | |
IgA plasma cell | 3 studies | 28% ± 7% | |
T cell | 3 studies | 28% ± 12% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
prostate | 99% | 4410.04 | 243 / 245 | 99% | 348.99 | 499 / 502 |
thymus | 97% | 2095.23 | 632 / 653 | 97% | 158.91 | 585 / 605 |
liver | 99% | 2280.08 | 224 / 226 | 90% | 149.66 | 365 / 406 |
breast | 87% | 1306.43 | 401 / 459 | 96% | 238.58 | 1073 / 1118 |
kidney | 98% | 2197.71 | 87 / 89 | 83% | 88.79 | 745 / 901 |
lung | 99% | 2461.08 | 573 / 578 | 81% | 87.08 | 939 / 1155 |
esophagus | 95% | 1638.42 | 1372 / 1445 | 85% | 79.03 | 155 / 183 |
skin | 95% | 1836.39 | 1721 / 1809 | 79% | 106.35 | 373 / 472 |
intestine | 96% | 1440.64 | 927 / 966 | 77% | 65.45 | 407 / 527 |
bladder | 95% | 1281.86 | 20 / 21 | 77% | 79.61 | 388 / 504 |
ovary | 74% | 1385.53 | 133 / 180 | 95% | 139.68 | 408 / 430 |
brain | 88% | 1121.38 | 2314 / 2642 | 70% | 58.27 | 493 / 705 |
uterus | 68% | 1000.16 | 115 / 170 | 85% | 100.47 | 392 / 459 |
stomach | 81% | 930.82 | 290 / 359 | 70% | 50.05 | 201 / 286 |
adrenal gland | 94% | 1549.63 | 242 / 258 | 54% | 41.66 | 124 / 230 |
pancreas | 46% | 363.38 | 150 / 328 | 88% | 88.38 | 156 / 178 |
spleen | 100% | 2664.81 | 241 / 241 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 100% | 48.96 | 1 / 1 |
peripheral blood | 100% | 8615.48 | 927 / 929 | 0% | 0 | 0 / 0 |
muscle | 98% | 1251.20 | 786 / 803 | 0% | 0 | 0 / 0 |
heart | 88% | 879.60 | 758 / 861 | 0% | 0 | 0 / 0 |
blood vessel | 86% | 834.41 | 1147 / 1335 | 0% | 0 | 0 / 0 |
adipose | 84% | 1092.86 | 1008 / 1204 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 81% | 102.58 | 65 / 80 |
lymph node | 0% | 0 | 0 / 0 | 79% | 61.15 | 23 / 29 |
tonsil | 0% | 0 | 0 / 0 | 78% | 68.48 | 35 / 45 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0008285 | Biological process | negative regulation of cell population proliferation |
GO_0031507 | Biological process | heterochromatin formation |
GO_0070062 | Cellular component | extracellular exosome |
GO_0005654 | Cellular component | nucleoplasm |
GO_0000786 | Cellular component | nucleosome |
GO_0005634 | Cellular component | nucleus |
GO_0046982 | Molecular function | protein heterodimerization activity |
GO_0031492 | Molecular function | nucleosomal DNA binding |
GO_0005515 | Molecular function | protein binding |
GO_0030527 | Molecular function | structural constituent of chromatin |
GO_0003674 | Molecular function | molecular_function |
Gene name | H2AC6 |
Protein name | Histone H2A type 1-C (H2A-clustered histone 6) (Histone H2A/l) |
Synonyms | HIST1H2AC H2AFL |
Description | FUNCTION: Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. |
Accessions | ENST00000602637.1 ENST00000377791.4 Q93077 ENST00000314088.6 |