Name | Number of supported studies | Average coverage | |
---|---|---|---|
fibroblast | 23 studies | 34% ± 14% | |
astrocyte | 14 studies | 41% ± 17% | |
oligodendrocyte precursor cell | 12 studies | 62% ± 15% | |
smooth muscle cell | 12 studies | 31% ± 12% | |
glutamatergic neuron | 11 studies | 52% ± 20% | |
GABAergic neuron | 10 studies | 42% ± 18% | |
adipocyte | 10 studies | 61% ± 16% | |
endothelial cell | 8 studies | 34% ± 17% | |
connective tissue cell | 7 studies | 50% ± 20% | |
neuron | 7 studies | 37% ± 19% | |
epithelial cell | 6 studies | 29% ± 13% | |
interneuron | 6 studies | 38% ± 17% | |
pericyte | 5 studies | 30% ± 5% | |
retinal rod cell | 5 studies | 76% ± 29% | |
hepatocyte | 4 studies | 75% ± 17% | |
podocyte | 4 studies | 54% ± 21% | |
microglial cell | 4 studies | 44% ± 21% | |
chondrocyte | 4 studies | 49% ± 29% | |
myofibroblast cell | 4 studies | 22% ± 3% | |
pancreatic A cell | 3 studies | 28% ± 5% | |
cholangiocyte | 3 studies | 56% ± 23% | |
hepatic stellate cell | 3 studies | 70% ± 12% | |
GABAergic interneuron | 3 studies | 37% ± 7% | |
macrophage | 3 studies | 31% ± 20% | |
progenitor cell | 3 studies | 62% ± 28% | |
retinal cone cell | 3 studies | 48% ± 37% | |
retinal bipolar neuron | 3 studies | 50% ± 33% | |
GABAergic amacrine cell | 3 studies | 36% ± 5% | |
glycinergic amacrine cell | 3 studies | 60% ± 15% | |
retinal ganglion cell | 3 studies | 38% ± 11% | |
type I pneumocyte | 3 studies | 21% ± 4% | |
mesothelial cell | 3 studies | 52% ± 2% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
kidney | 96% | 908.17 | 85 / 89 | 90% | 28.13 | 814 / 901 |
liver | 98% | 1172.19 | 222 / 226 | 87% | 15.89 | 353 / 406 |
prostate | 98% | 1108.46 | 239 / 245 | 80% | 7.51 | 404 / 502 |
lung | 95% | 843.04 | 550 / 578 | 69% | 9.10 | 795 / 1155 |
stomach | 82% | 803.41 | 294 / 359 | 70% | 8.35 | 200 / 286 |
breast | 78% | 668.26 | 358 / 459 | 73% | 9.17 | 813 / 1118 |
intestine | 96% | 1348.28 | 928 / 966 | 53% | 5.30 | 280 / 527 |
ovary | 93% | 1364.82 | 168 / 180 | 53% | 5.25 | 227 / 430 |
bladder | 100% | 1808.38 | 21 / 21 | 45% | 4.53 | 229 / 504 |
esophagus | 81% | 908.76 | 1168 / 1445 | 64% | 8.84 | 118 / 183 |
thymus | 77% | 503.52 | 501 / 653 | 43% | 4.05 | 260 / 605 |
uterus | 78% | 603.02 | 132 / 170 | 36% | 6.26 | 164 / 459 |
skin | 62% | 930.27 | 1130 / 1809 | 38% | 8.40 | 179 / 472 |
brain | 27% | 98.71 | 707 / 2642 | 73% | 7.25 | 516 / 705 |
blood vessel | 100% | 2908.42 | 1332 / 1335 | 0% | 0 | 0 / 0 |
adipose | 99% | 1248.25 | 1190 / 1204 | 0% | 0 | 0 / 0 |
pancreas | 5% | 19.95 | 17 / 328 | 88% | 13.00 | 156 / 178 |
adrenal gland | 27% | 111.06 | 69 / 258 | 41% | 3.82 | 95 / 230 |
spleen | 59% | 265.27 | 143 / 241 | 0% | 0 | 0 / 0 |
heart | 49% | 393.10 | 423 / 861 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 33% | 2.74 | 15 / 45 |
lymph node | 0% | 0 | 0 / 0 | 17% | 0.89 | 5 / 29 |
muscle | 6% | 24.15 | 50 / 803 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 1% | 0.04 | 1 / 80 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
peripheral blood | 0% | 0 | 0 / 929 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0098696 | Biological process | regulation of neurotransmitter receptor localization to postsynaptic specialization membrane |
GO_0009966 | Biological process | regulation of signal transduction |
GO_0016477 | Biological process | cell migration |
GO_0005796 | Cellular component | Golgi lumen |
GO_0009986 | Cellular component | cell surface |
GO_0043202 | Cellular component | lysosomal lumen |
GO_0098552 | Cellular component | side of membrane |
GO_0098978 | Cellular component | glutamatergic synapse |
GO_0045202 | Cellular component | synapse |
GO_0005576 | Cellular component | extracellular region |
GO_0062023 | Cellular component | collagen-containing extracellular matrix |
GO_0005886 | Cellular component | plasma membrane |
GO_0005634 | Cellular component | nucleus |
GO_0015026 | Molecular function | coreceptor activity |
GO_0005515 | Molecular function | protein binding |
Gene name | GPC6 |
Protein name | Glypican-6 [Cleaved into: Secreted glypican-6] |
Synonyms | UNQ369/PRO705 |
Description | FUNCTION: Cell surface proteoglycan that bears heparan sulfate. Putative cell surface coreceptor for growth factors, extracellular matrix proteins, proteases and anti-proteases (By similarity). Enhances migration and invasion of cancer cells through WNT5A signaling. . |
Accessions | ENST00000377047.9 Q9Y625 |