Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 29 studies | 38% ± 17% | |
microglial cell | 13 studies | 34% ± 20% | |
glutamatergic neuron | 12 studies | 48% ± 25% | |
GABAergic neuron | 11 studies | 42% ± 25% | |
goblet cell | 10 studies | 55% ± 18% | |
macrophage | 10 studies | 30% ± 18% | |
fibroblast | 10 studies | 38% ± 23% | |
smooth muscle cell | 10 studies | 33% ± 14% | |
pericyte | 9 studies | 29% ± 14% | |
oligodendrocyte precursor cell | 9 studies | 24% ± 6% | |
epithelial cell | 9 studies | 37% ± 18% | |
astrocyte | 9 studies | 29% ± 19% | |
ciliated cell | 7 studies | 25% ± 10% | |
dendritic cell | 7 studies | 20% ± 4% | |
basal cell | 7 studies | 42% ± 19% | |
plasma cell | 6 studies | 42% ± 21% | |
club cell | 6 studies | 29% ± 11% | |
interneuron | 6 studies | 48% ± 21% | |
adipocyte | 6 studies | 31% ± 23% | |
endothelial cell of artery | 6 studies | 27% ± 14% | |
mast cell | 6 studies | 20% ± 6% | |
T cell | 6 studies | 26% ± 5% | |
endothelial cell of lymphatic vessel | 6 studies | 28% ± 7% | |
duct epithelial cell | 5 studies | 50% ± 25% | |
respiratory goblet cell | 5 studies | 49% ± 18% | |
podocyte | 5 studies | 56% ± 14% | |
neuron | 5 studies | 45% ± 24% | |
B cell | 5 studies | 26% ± 6% | |
transit amplifying cell | 5 studies | 36% ± 25% | |
mucus secreting cell | 5 studies | 61% ± 16% | |
vein endothelial cell | 5 studies | 39% ± 22% | |
type II pneumocyte | 5 studies | 23% ± 4% | |
granule cell | 4 studies | 38% ± 13% | |
progenitor cell | 4 studies | 22% ± 4% | |
enterocyte | 4 studies | 22% ± 4% | |
CD4-positive, alpha-beta T cell | 4 studies | 23% ± 5% | |
CD8-positive, alpha-beta T cell | 4 studies | 22% ± 5% | |
mesothelial cell | 4 studies | 26% ± 5% | |
amacrine cell | 4 studies | 22% ± 4% | |
monocyte | 4 studies | 26% ± 4% | |
natural killer cell | 4 studies | 28% ± 4% | |
kidney loop of Henle epithelial cell | 4 studies | 22% ± 4% | |
conventional dendritic cell | 3 studies | 21% ± 1% | |
plasmablast | 3 studies | 30% ± 17% | |
kidney distal convoluted tubule epithelial cell | 3 studies | 17% ± 2% | |
GABAergic interneuron | 3 studies | 39% ± 2% | |
serous secreting cell | 3 studies | 38% ± 4% | |
endocardial cell | 3 studies | 71% ± 19% | |
GABAergic amacrine cell | 3 studies | 28% ± 6% | |
glycinergic amacrine cell | 3 studies | 21% ± 1% | |
germinal center B cell | 3 studies | 25% ± 7% | |
myeloid cell | 3 studies | 21% ± 3% | |
endothelial cell of vascular tree | 3 studies | 51% ± 16% | |
cholangiocyte | 3 studies | 51% ± 19% | |
hepatocyte | 3 studies | 56% ± 26% | |
type I pneumocyte | 3 studies | 17% ± 2% | |
connective tissue cell | 3 studies | 42% ± 24% | |
leukocyte | 3 studies | 24% ± 7% | |
alveolar macrophage | 3 studies | 25% ± 5% | |
lymphocyte | 3 studies | 38% ± 6% | |
oligodendrocyte | 3 studies | 37% ± 19% | |
parietal epithelial cell | 3 studies | 42% ± 5% | |
regulatory T cell | 3 studies | 22% ± 5% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
prostate | 100% | 1297.81 | 245 / 245 | 99% | 56.61 | 499 / 502 |
pancreas | 100% | 1358.91 | 328 / 328 | 98% | 54.09 | 174 / 178 |
breast | 100% | 805.81 | 459 / 459 | 96% | 28.48 | 1068 / 1118 |
stomach | 96% | 2947.30 | 344 / 359 | 99% | 110.31 | 282 / 286 |
bladder | 95% | 577.00 | 20 / 21 | 96% | 50.07 | 484 / 504 |
intestine | 91% | 2567.77 | 879 / 966 | 100% | 136.86 | 526 / 527 |
lung | 96% | 576.42 | 555 / 578 | 94% | 30.37 | 1090 / 1155 |
uterus | 97% | 507.50 | 165 / 170 | 93% | 34.51 | 426 / 459 |
skin | 99% | 710.23 | 1786 / 1809 | 91% | 17.38 | 429 / 472 |
thymus | 99% | 762.67 | 647 / 653 | 88% | 25.80 | 535 / 605 |
ovary | 92% | 388.86 | 166 / 180 | 93% | 20.11 | 398 / 430 |
liver | 99% | 972.44 | 223 / 226 | 84% | 22.33 | 341 / 406 |
esophagus | 88% | 1402.14 | 1266 / 1445 | 91% | 46.32 | 167 / 183 |
kidney | 100% | 1320.10 | 89 / 89 | 66% | 12.36 | 593 / 901 |
adrenal gland | 98% | 500.98 | 252 / 258 | 61% | 10.07 | 140 / 230 |
brain | 85% | 407.91 | 2254 / 2642 | 49% | 6.41 | 345 / 705 |
spleen | 100% | 676.00 | 241 / 241 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 100% | 9.24 | 1 / 1 |
blood vessel | 100% | 2383.97 | 1331 / 1335 | 0% | 0 | 0 / 0 |
adipose | 99% | 637.66 | 1193 / 1204 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 98% | 21.70 | 78 / 80 |
lymph node | 0% | 0 | 0 / 0 | 97% | 99.46 | 28 / 29 |
tonsil | 0% | 0 | 0 / 0 | 93% | 22.67 | 42 / 45 |
heart | 72% | 307.02 | 618 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 72% | 621.84 | 665 / 929 | 0% | 0 | 0 / 0 |
muscle | 22% | 75.02 | 175 / 803 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0007219 | Biological process | Notch signaling pathway |
GO_0042351 | Biological process | 'de novo' GDP-L-fucose biosynthetic process |
GO_0019673 | Biological process | GDP-mannose metabolic process |
GO_0070062 | Cellular component | extracellular exosome |
GO_0005829 | Cellular component | cytosol |
GO_0005737 | Cellular component | cytoplasm |
GO_0042802 | Molecular function | identical protein binding |
GO_0005515 | Molecular function | protein binding |
GO_0070401 | Molecular function | NADP+ binding |
GO_0008446 | Molecular function | GDP-mannose 4,6-dehydratase activity |
Gene name | GMDS |
Protein name | GDP-mannose 4,6 dehydratase (EC 4.2.1.47) (GDP-D-mannose dehydratase) (GMD) |
Synonyms | |
Description | FUNCTION: Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6-deoxy-D-mannose. . |
Accessions | ENST00000380815.5 [O60547-1] O60547 ENST00000530927.5 [O60547-2] |