Name | Number of supported studies | Average coverage | |
|---|---|---|---|
| endothelial cell | 29 studies | 38% ± 17% | |
| microglial cell | 13 studies | 34% ± 20% | |
| glutamatergic neuron | 12 studies | 48% ± 25% | |
| GABAergic neuron | 11 studies | 42% ± 25% | |
| goblet cell | 10 studies | 55% ± 18% | |
| macrophage | 10 studies | 30% ± 18% | |
| fibroblast | 10 studies | 38% ± 23% | |
| smooth muscle cell | 10 studies | 33% ± 14% | |
| pericyte | 9 studies | 29% ± 14% | |
| oligodendrocyte precursor cell | 9 studies | 24% ± 6% | |
| epithelial cell | 9 studies | 37% ± 18% | |
| astrocyte | 9 studies | 29% ± 19% | |
| ciliated cell | 7 studies | 25% ± 10% | |
| dendritic cell | 7 studies | 20% ± 4% | |
| basal cell | 7 studies | 42% ± 19% | |
| plasma cell | 6 studies | 42% ± 21% | |
| club cell | 6 studies | 29% ± 11% | |
| interneuron | 6 studies | 48% ± 21% | |
| adipocyte | 6 studies | 31% ± 23% | |
| endothelial cell of artery | 6 studies | 27% ± 14% | |
| mast cell | 6 studies | 20% ± 6% | |
| T cell | 6 studies | 26% ± 5% | |
| endothelial cell of lymphatic vessel | 6 studies | 28% ± 7% | |
| duct epithelial cell | 5 studies | 50% ± 25% | |
| respiratory goblet cell | 5 studies | 49% ± 18% | |
| podocyte | 5 studies | 56% ± 14% | |
| neuron | 5 studies | 45% ± 24% | |
| B cell | 5 studies | 26% ± 6% | |
| transit amplifying cell | 5 studies | 36% ± 25% | |
| mucus secreting cell | 5 studies | 61% ± 16% | |
| vein endothelial cell | 5 studies | 39% ± 22% | |
| type II pneumocyte | 5 studies | 23% ± 4% | |
| granule cell | 4 studies | 38% ± 13% | |
| progenitor cell | 4 studies | 22% ± 4% | |
| enterocyte | 4 studies | 22% ± 4% | |
| CD4-positive, alpha-beta T cell | 4 studies | 23% ± 5% | |
| CD8-positive, alpha-beta T cell | 4 studies | 22% ± 5% | |
| mesothelial cell | 4 studies | 26% ± 5% | |
| amacrine cell | 4 studies | 22% ± 4% | |
| monocyte | 4 studies | 26% ± 4% | |
| natural killer cell | 4 studies | 28% ± 4% | |
| kidney loop of Henle epithelial cell | 4 studies | 22% ± 4% | |
| conventional dendritic cell | 3 studies | 21% ± 1% | |
| plasmablast | 3 studies | 30% ± 17% | |
| kidney distal convoluted tubule epithelial cell | 3 studies | 17% ± 2% | |
| GABAergic interneuron | 3 studies | 39% ± 2% | |
| serous secreting cell | 3 studies | 38% ± 4% | |
| endocardial cell | 3 studies | 71% ± 19% | |
| GABAergic amacrine cell | 3 studies | 28% ± 6% | |
| glycinergic amacrine cell | 3 studies | 21% ± 1% | |
| germinal center B cell | 3 studies | 25% ± 7% | |
| myeloid cell | 3 studies | 21% ± 3% | |
| endothelial cell of vascular tree | 3 studies | 51% ± 16% | |
| cholangiocyte | 3 studies | 51% ± 19% | |
| hepatocyte | 3 studies | 56% ± 26% | |
| type I pneumocyte | 3 studies | 17% ± 2% | |
| connective tissue cell | 3 studies | 42% ± 24% | |
| leukocyte | 3 studies | 24% ± 7% | |
| alveolar macrophage | 3 studies | 25% ± 5% | |
| lymphocyte | 3 studies | 38% ± 6% | |
| oligodendrocyte | 3 studies | 37% ± 19% | |
| parietal epithelial cell | 3 studies | 42% ± 5% | |
| regulatory T cell | 3 studies | 22% ± 5% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
|---|---|---|---|---|---|---|
| prostate | 100% | 1297.81 | 245 / 245 | 99% | 56.61 | 499 / 502 |
| pancreas | 100% | 1358.91 | 328 / 328 | 98% | 54.09 | 174 / 178 |
| breast | 100% | 805.81 | 459 / 459 | 96% | 28.48 | 1068 / 1118 |
| stomach | 96% | 2947.30 | 344 / 359 | 99% | 110.31 | 282 / 286 |
| bladder | 95% | 577.00 | 20 / 21 | 96% | 50.07 | 484 / 504 |
| intestine | 91% | 2567.77 | 879 / 966 | 100% | 136.86 | 526 / 527 |
| lung | 96% | 576.42 | 555 / 578 | 94% | 30.37 | 1090 / 1155 |
| uterus | 97% | 507.50 | 165 / 170 | 93% | 34.51 | 426 / 459 |
| skin | 99% | 710.23 | 1786 / 1809 | 91% | 17.38 | 429 / 472 |
| thymus | 99% | 762.67 | 647 / 653 | 88% | 25.80 | 535 / 605 |
| ovary | 92% | 388.86 | 166 / 180 | 93% | 20.11 | 398 / 430 |
| liver | 99% | 972.44 | 223 / 226 | 84% | 22.33 | 341 / 406 |
| esophagus | 88% | 1402.14 | 1266 / 1445 | 91% | 46.32 | 167 / 183 |
| kidney | 100% | 1320.10 | 89 / 89 | 66% | 12.36 | 593 / 901 |
| adrenal gland | 98% | 500.98 | 252 / 258 | 61% | 10.07 | 140 / 230 |
| brain | 85% | 407.91 | 2254 / 2642 | 49% | 6.41 | 345 / 705 |
| spleen | 100% | 676.00 | 241 / 241 | 0% | 0 | 0 / 0 |
| ureter | 0% | 0 | 0 / 0 | 100% | 9.24 | 1 / 1 |
| blood vessel | 100% | 2383.97 | 1331 / 1335 | 0% | 0 | 0 / 0 |
| adipose | 99% | 637.66 | 1193 / 1204 | 0% | 0 | 0 / 0 |
| eye | 0% | 0 | 0 / 0 | 98% | 21.70 | 78 / 80 |
| lymph node | 0% | 0 | 0 / 0 | 97% | 99.46 | 28 / 29 |
| tonsil | 0% | 0 | 0 / 0 | 93% | 22.67 | 42 / 45 |
| heart | 72% | 307.02 | 618 / 861 | 0% | 0 | 0 / 0 |
| peripheral blood | 72% | 621.84 | 665 / 929 | 0% | 0 | 0 / 0 |
| muscle | 22% | 75.02 | 175 / 803 | 0% | 0 | 0 / 0 |
| abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| GO_0007219 | Biological process | Notch signaling pathway |
| GO_0042351 | Biological process | 'de novo' GDP-L-fucose biosynthetic process |
| GO_0019673 | Biological process | GDP-mannose metabolic process |
| GO_0070062 | Cellular component | extracellular exosome |
| GO_0005829 | Cellular component | cytosol |
| GO_0005737 | Cellular component | cytoplasm |
| GO_0042802 | Molecular function | identical protein binding |
| GO_0005515 | Molecular function | protein binding |
| GO_0070401 | Molecular function | NADP+ binding |
| GO_0008446 | Molecular function | GDP-mannose 4,6-dehydratase activity |
| Gene name | GMDS |
| Protein name | GDP-mannose 4,6 dehydratase (EC 4.2.1.47) (GDP-D-mannose dehydratase) (GMD) |
| Synonyms | |
| Description | FUNCTION: Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6-deoxy-D-mannose. . |
| Accessions | ENST00000380815.5 [O60547-1] O60547 ENST00000530927.5 [O60547-2] |