GLCCI1 report

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I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
oligodendrocyte precursor cell	13 studies	56% ± 19%	Explore
astrocyte	12 studies	35% ± 12%	Explore
microglial cell	11 studies	26% ± 6%	Explore
regulatory T cell	11 studies	27% ± 12%	Explore
plasma cell	10 studies	42% ± 22%	Explore
glutamatergic neuron	10 studies	51% ± 25%	Explore
GABAergic neuron	9 studies	48% ± 22%	Explore
adipocyte	9 studies	34% ± 13%	Explore
type I pneumocyte	8 studies	47% ± 19%	Explore
CD16-negative, CD56-bright natural killer cell, human	6 studies	25% ± 10%	Explore
endothelial cell	6 studies	29% ± 14%	Explore
epithelial cell	6 studies	21% ± 5%	Explore
interneuron	6 studies	52% ± 17%	Explore
macrophage	6 studies	22% ± 5%	Explore
neuron	6 studies	31% ± 11%	Explore
oligodendrocyte	6 studies	24% ± 10%	Explore
retinal bipolar neuron	5 studies	29% ± 12%	Explore
retinal cone cell	5 studies	27% ± 14%	Explore
T cell	5 studies	31% ± 9%	Explore
club cell	5 studies	40% ± 17%	Explore
ciliated cell	5 studies	28% ± 10%	Explore
natural killer cell	5 studies	28% ± 7%	Explore
type II pneumocyte	5 studies	46% ± 11%	Explore
granule cell	4 studies	35% ± 8%	Explore
CD8-positive, alpha-beta T cell	4 studies	24% ± 6%	Explore
lymphocyte	4 studies	29% ± 12%	Explore
amacrine cell	4 studies	29% ± 12%	Explore
retinal rod cell	4 studies	30% ± 11%	Explore
GABAergic interneuron	3 studies	34% ± 4%	Explore
CD16-positive, CD56-dim natural killer cell, human	3 studies	21% ± 3%	Explore
CD4-positive, alpha-beta T cell	3 studies	28% ± 4%	Explore
effector memory CD8-positive, alpha-beta T cell	3 studies	24% ± 5%	Explore
GABAergic amacrine cell	3 studies	31% ± 8%	Explore
Mueller cell	3 studies	25% ± 7%	Explore
ON-bipolar cell	3 studies	39% ± 19%	Explore
glycinergic amacrine cell	3 studies	31% ± 7%	Explore
retinal ganglion cell	3 studies	26% ± 11%	Explore
rod bipolar cell	3 studies	49% ± 20%	Explore
T follicular helper cell	3 studies	19% ± 2%	Explore
B cell	3 studies	32% ± 6%	Explore
fibroblast	3 studies	22% ± 3%	Explore
respiratory goblet cell	3 studies	31% ± 13%	Explore
CD8-positive, alpha-beta memory T cell	3 studies	17% ± 1%	Explore

II. Expression across tissues

sc-RNAseq dataData table

Name	Number of supported studies	Average coverage
brain	14 studies	38% ± 20%	Explore
eye	5 studies	30% ± 9%	Explore
lung	4 studies	29% ± 5%	Explore
adipose	3 studies	24% ± 9%	Explore

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
thymus	100%	6216.91	653 / 653	99%	40.20	598 / 605
brain	97%	1759.71	2575 / 2642	100%	34.80	703 / 705
breast	98%	1039.34	452 / 459	95%	13.46	1065 / 1118
lung	99%	1702.12	575 / 578	92%	12.19	1063 / 1155
prostate	99%	1065.53	242 / 245	91%	7.01	455 / 502
bladder	95%	1115.38	20 / 21	86%	8.41	431 / 504
kidney	97%	948.73	86 / 89	83%	8.53	744 / 901
stomach	99%	1281.55	356 / 359	78%	5.60	222 / 286
uterus	97%	819.93	165 / 170	78%	6.63	359 / 459
skin	97%	1467.63	1752 / 1809	74%	6.85	351 / 472
intestine	99%	1156.76	957 / 966	71%	4.52	376 / 527
adrenal gland	88%	519.09	227 / 258	81%	23.53	187 / 230
esophagus	89%	529.62	1290 / 1445	78%	5.89	143 / 183
ovary	99%	1102.37	179 / 180	66%	4.04	284 / 430
liver	82%	438.61	185 / 226	39%	1.99	157 / 406
pancreas	39%	171.41	128 / 328	72%	5.80	128 / 178
spleen	100%	2751.48	241 / 241	0%	0	0 / 0
ureter	0%	0	0 / 0	100%	9.07	1 / 1
adipose	97%	1055.38	1171 / 1204	0%	0	0 / 0
blood vessel	96%	654.05	1277 / 1335	0%	0	0 / 0
lymph node	0%	0	0 / 0	93%	16.06	27 / 29
peripheral blood	76%	2130.33	709 / 929	0%	0	0 / 0
tonsil	0%	0	0 / 0	76%	5.11	34 / 45
muscle	44%	220.33	356 / 803	0%	0	0 / 0
heart	41%	171.56	351 / 861	0%	0	0 / 0
eye	0%	0	0 / 0	10%	0.48	8 / 80
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0