Name | Number of supported studies | Average coverage | |
---|---|---|---|
pericyte | 24 studies | 36% ± 16% | |
endothelial cell | 23 studies | 35% ± 17% | |
astrocyte | 18 studies | 50% ± 23% | |
fibroblast | 16 studies | 27% ± 11% | |
ciliated cell | 14 studies | 33% ± 13% | |
oligodendrocyte precursor cell | 13 studies | 38% ± 18% | |
type I pneumocyte | 12 studies | 45% ± 20% | |
glutamatergic neuron | 12 studies | 46% ± 21% | |
smooth muscle cell | 12 studies | 30% ± 11% | |
GABAergic neuron | 10 studies | 48% ± 22% | |
epithelial cell | 10 studies | 34% ± 14% | |
macrophage | 10 studies | 32% ± 13% | |
microglial cell | 8 studies | 36% ± 15% | |
basal cell | 8 studies | 31% ± 13% | |
endothelial cell of lymphatic vessel | 7 studies | 42% ± 11% | |
myofibroblast cell | 6 studies | 26% ± 11% | |
neuron | 6 studies | 45% ± 19% | |
interneuron | 6 studies | 55% ± 23% | |
club cell | 6 studies | 44% ± 20% | |
type II pneumocyte | 6 studies | 31% ± 10% | |
connective tissue cell | 5 studies | 29% ± 10% | |
hepatocyte | 5 studies | 58% ± 26% | |
epithelial cell of proximal tubule | 5 studies | 50% ± 23% | |
kidney loop of Henle epithelial cell | 5 studies | 44% ± 26% | |
amacrine cell | 5 studies | 27% ± 6% | |
myeloid cell | 5 studies | 22% ± 5% | |
cholangiocyte | 4 studies | 69% ± 20% | |
kidney distal convoluted tubule epithelial cell | 4 studies | 44% ± 15% | |
progenitor cell | 4 studies | 29% ± 6% | |
Mueller cell | 4 studies | 21% ± 4% | |
respiratory goblet cell | 4 studies | 49% ± 18% | |
renal beta-intercalated cell | 3 studies | 47% ± 21% | |
abnormal cell | 3 studies | 41% ± 23% | |
GABAergic interneuron | 3 studies | 56% ± 7% | |
brush cell | 3 studies | 26% ± 5% | |
GABAergic amacrine cell | 3 studies | 34% ± 14% | |
glycinergic amacrine cell | 3 studies | 32% ± 8% | |
ependymal cell | 3 studies | 43% ± 20% | |
capillary endothelial cell | 3 studies | 21% ± 7% | |
chondrocyte | 3 studies | 33% ± 6% | |
transit amplifying cell | 3 studies | 26% ± 8% | |
renal alpha-intercalated cell | 3 studies | 38% ± 18% | |
mucus secreting cell | 3 studies | 47% ± 15% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
prostate | 100% | 6204.84 | 245 / 245 | 100% | 11.80 | 500 / 502 |
breast | 100% | 4704.12 | 459 / 459 | 98% | 14.01 | 1092 / 1118 |
kidney | 100% | 8887.87 | 89 / 89 | 97% | 13.47 | 873 / 901 |
ovary | 99% | 2616.34 | 179 / 180 | 97% | 9.16 | 418 / 430 |
pancreas | 100% | 4855.13 | 328 / 328 | 96% | 6.72 | 171 / 178 |
skin | 100% | 3208.03 | 1804 / 1809 | 94% | 10.33 | 444 / 472 |
lung | 100% | 4876.12 | 577 / 578 | 94% | 6.66 | 1082 / 1155 |
thymus | 100% | 7785.57 | 653 / 653 | 92% | 11.95 | 555 / 605 |
brain | 96% | 3367.47 | 2524 / 2642 | 96% | 8.00 | 676 / 705 |
intestine | 100% | 4074.42 | 965 / 966 | 91% | 7.78 | 478 / 527 |
stomach | 100% | 4794.51 | 359 / 359 | 90% | 8.37 | 258 / 286 |
bladder | 100% | 4033.38 | 21 / 21 | 90% | 6.83 | 452 / 504 |
esophagus | 97% | 1935.25 | 1397 / 1445 | 86% | 7.09 | 157 / 183 |
liver | 100% | 4381.92 | 226 / 226 | 82% | 5.00 | 331 / 406 |
adrenal gland | 100% | 6084.21 | 258 / 258 | 70% | 4.94 | 160 / 230 |
uterus | 100% | 2995.17 | 170 / 170 | 69% | 5.09 | 317 / 459 |
adipose | 100% | 2840.72 | 1204 / 1204 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 100% | 20.75 | 80 / 80 |
spleen | 100% | 1828.53 | 241 / 241 | 0% | 0 | 0 / 0 |
blood vessel | 96% | 3333.59 | 1285 / 1335 | 0% | 0 | 0 / 0 |
heart | 86% | 1277.70 | 742 / 861 | 0% | 0 | 0 / 0 |
muscle | 65% | 730.70 | 519 / 803 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 44% | 2.00 | 20 / 45 |
lymph node | 0% | 0 | 0 / 0 | 28% | 0.73 | 8 / 29 |
peripheral blood | 12% | 222.94 | 115 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_1905606 | Biological process | regulation of presynapse assembly |
GO_0098942 | Biological process | retrograde trans-synaptic signaling by trans-synaptic protein complex |
GO_0048813 | Biological process | dendrite morphogenesis |
GO_0007167 | Biological process | enzyme-linked receptor protein signaling pathway |
GO_0098974 | Biological process | postsynaptic actin cytoskeleton organization |
GO_0016601 | Biological process | Rac protein signal transduction |
GO_1904395 | Biological process | positive regulation of skeletal muscle acetylcholine-gated channel clustering |
GO_0007416 | Biological process | synapse assembly |
GO_0098978 | Cellular component | glutamatergic synapse |
GO_0005856 | Cellular component | cytoskeleton |
GO_0043197 | Cellular component | dendritic spine |
GO_0009898 | Cellular component | cytoplasmic side of plasma membrane |
GO_0098890 | Cellular component | extrinsic component of postsynaptic membrane |
GO_0030425 | Cellular component | dendrite |
GO_0030175 | Cellular component | filopodium |
GO_0005829 | Cellular component | cytosol |
GO_0005085 | Molecular function | guanyl-nucleotide exchange factor activity |
GO_0031267 | Molecular function | small GTPase binding |
GO_0008092 | Molecular function | cytoskeletal protein binding |
GO_0005515 | Molecular function | protein binding |
Gene name | FARP1 |
Protein name | FERM, ARHGEF and pleckstrin domain-containing protein 1 (Chondrocyte-derived ezrin-like protein) (FERM, RhoGEF and pleckstrin domain-containing protein 1) (Pleckstrin homology domain-containing family C member 2) (PH domain-containing family C member 2) FERM, ARHGEF and pleckstrin domain-containing protein 1 (FERM, RhoGEF and pleckstrin domain-containing protein 1) FERM, ARH/RhoGEF and pleckstrin domain protein 1 |
Synonyms | CDEP hCG_1811328 PLEKHC2 |
Description | FUNCTION: Functions as a guanine nucleotide exchange factor for RAC1. May play a role in semaphorin signaling. Plays a role in the assembly and disassembly of dendritic filopodia, the formation of dendritic spines, regulation of dendrite length and ultimately the formation of synapses (By similarity). . |
Accessions | ENST00000627049.2 ENST00000595437.5 ENST00000423063.2 M0R262 ENST00000598389.5 M0QXT1 Q9Y4F1 ENST00000601009.1 ENST00000376581.9 [Q9Y4F1-3] ENST00000596256.1 A0A2X0TVY0 H0Y783 ENST00000319562.11 [Q9Y4F1-1] ENST00000596580.2 C9JME2 A0A1B0GV68 M0QYB0 |