Name | Number of supported studies | Average coverage | |
---|---|---|---|
fibroblast | 32 studies | 27% ± 11% | |
B cell | 25 studies | 22% ± 6% | |
endothelial cell of lymphatic vessel | 16 studies | 28% ± 9% | |
endothelial cell | 16 studies | 24% ± 8% | |
basal cell | 14 studies | 35% ± 19% | |
plasma cell | 13 studies | 33% ± 12% | |
pericyte | 13 studies | 21% ± 6% | |
epithelial cell | 12 studies | 42% ± 21% | |
naive B cell | 12 studies | 21% ± 4% | |
connective tissue cell | 10 studies | 31% ± 11% | |
smooth muscle cell | 10 studies | 19% ± 3% | |
mesothelial cell | 8 studies | 29% ± 17% | |
glutamatergic neuron | 8 studies | 37% ± 19% | |
natural killer cell | 7 studies | 17% ± 2% | |
ciliated cell | 7 studies | 40% ± 17% | |
oligodendrocyte precursor cell | 7 studies | 26% ± 8% | |
myofibroblast cell | 6 studies | 21% ± 3% | |
renal alpha-intercalated cell | 6 studies | 34% ± 8% | |
neuron | 6 studies | 28% ± 12% | |
enterocyte | 6 studies | 37% ± 6% | |
memory B cell | 6 studies | 18% ± 3% | |
GABAergic neuron | 6 studies | 36% ± 18% | |
kidney loop of Henle epithelial cell | 5 studies | 21% ± 3% | |
abnormal cell | 5 studies | 28% ± 12% | |
gamma-delta T cell | 5 studies | 31% ± 8% | |
secretory cell | 5 studies | 48% ± 17% | |
endothelial cell of vascular tree | 5 studies | 19% ± 4% | |
interneuron | 5 studies | 37% ± 19% | |
club cell | 4 studies | 31% ± 20% | |
respiratory goblet cell | 4 studies | 26% ± 14% | |
pancreatic A cell | 4 studies | 28% ± 10% | |
plasmablast | 4 studies | 32% ± 19% | |
IgG plasma cell | 4 studies | 22% ± 2% | |
astrocyte | 4 studies | 24% ± 5% | |
vein endothelial cell | 4 studies | 22% ± 5% | |
duct epithelial cell | 3 studies | 22% ± 4% | |
neural crest cell | 3 studies | 23% ± 4% | |
IgA plasma cell | 3 studies | 25% ± 2% | |
retinal bipolar neuron | 3 studies | 37% ± 13% | |
OFF-bipolar cell | 3 studies | 27% ± 4% | |
retinal ganglion cell | 3 studies | 42% ± 20% | |
extravillous trophoblast | 3 studies | 30% ± 10% | |
immature B cell | 3 studies | 25% ± 7% | |
serous secreting cell | 3 studies | 15% ± 0% | |
lymphocyte | 3 studies | 27% ± 7% | |
germinal center B cell | 3 studies | 24% ± 4% | |
macrophage | 3 studies | 18% ± 3% | |
pancreatic ductal cell | 3 studies | 37% ± 11% | |
goblet cell | 3 studies | 21% ± 5% | |
glial cell | 3 studies | 33% ± 23% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 1665.50 | 1445 / 1445 | 100% | 65.28 | 183 / 183 |
ovary | 100% | 1917.26 | 180 / 180 | 100% | 54.02 | 430 / 430 |
lung | 100% | 2236.71 | 577 / 578 | 100% | 65.37 | 1153 / 1155 |
breast | 100% | 2054.59 | 459 / 459 | 99% | 33.46 | 1106 / 1118 |
brain | 99% | 2438.33 | 2617 / 2642 | 100% | 54.98 | 704 / 705 |
pancreas | 100% | 2262.98 | 328 / 328 | 99% | 62.66 | 176 / 178 |
prostate | 100% | 1624.90 | 245 / 245 | 98% | 27.12 | 494 / 502 |
uterus | 100% | 2544.13 | 170 / 170 | 98% | 41.12 | 448 / 459 |
thymus | 100% | 3444.87 | 653 / 653 | 97% | 81.94 | 586 / 605 |
bladder | 100% | 1793.19 | 21 / 21 | 97% | 44.07 | 488 / 504 |
kidney | 100% | 2149.64 | 89 / 89 | 96% | 35.42 | 862 / 901 |
stomach | 100% | 2321.42 | 359 / 359 | 95% | 38.71 | 273 / 286 |
skin | 100% | 2637.87 | 1806 / 1809 | 95% | 48.06 | 447 / 472 |
adrenal gland | 100% | 1718.12 | 258 / 258 | 94% | 30.65 | 217 / 230 |
intestine | 100% | 2142.76 | 966 / 966 | 94% | 32.04 | 497 / 527 |
liver | 99% | 1460.00 | 223 / 226 | 82% | 16.61 | 331 / 406 |
adipose | 100% | 2533.80 | 1204 / 1204 | 0% | 0 | 0 / 0 |
spleen | 100% | 2020.17 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 29.34 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 12.02 | 1 / 1 |
blood vessel | 100% | 2379.65 | 1333 / 1335 | 0% | 0 | 0 / 0 |
heart | 98% | 1957.99 | 847 / 861 | 0% | 0 | 0 / 0 |
muscle | 95% | 716.94 | 760 / 803 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 93% | 21.22 | 27 / 29 |
eye | 0% | 0 | 0 / 0 | 53% | 9.44 | 42 / 80 |
peripheral blood | 27% | 759.04 | 255 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0007165 | Biological process | signal transduction |
GO_0008150 | Biological process | biological_process |
GO_0005615 | Cellular component | extracellular space |
GO_0070062 | Cellular component | extracellular exosome |
GO_0031089 | Cellular component | platelet dense granule lumen |
GO_0005576 | Cellular component | extracellular region |
GO_0005794 | Cellular component | Golgi apparatus |
GO_0030246 | Molecular function | carbohydrate binding |
GO_0005515 | Molecular function | protein binding |
GO_0005125 | Molecular function | cytokine activity |
Gene name | FAM3C |
Protein name | FAM3 metabolism regulating signaling molecule C Protein FAM3C (Interleukin-like EMT inducer) |
Synonyms | GS3786 ILEI |
Description | FUNCTION: May be involved in retinal laminar formation. Promotes epithelial to mesenchymal transition. |
Accessions | C9JP35 C9JMN4 ENST00000359943.8 ENST00000426156.1 ENST00000412653.5 Q92520 |