Name | Number of supported studies | Average coverage | |
|---|---|---|---|
| fibroblast | 32 studies | 27% ± 11% | |
| B cell | 25 studies | 22% ± 6% | |
| endothelial cell of lymphatic vessel | 16 studies | 28% ± 9% | |
| endothelial cell | 16 studies | 24% ± 8% | |
| basal cell | 14 studies | 35% ± 19% | |
| plasma cell | 13 studies | 33% ± 12% | |
| pericyte | 13 studies | 21% ± 6% | |
| epithelial cell | 12 studies | 42% ± 21% | |
| naive B cell | 12 studies | 21% ± 4% | |
| connective tissue cell | 10 studies | 31% ± 11% | |
| smooth muscle cell | 10 studies | 19% ± 3% | |
| mesothelial cell | 8 studies | 29% ± 17% | |
| glutamatergic neuron | 8 studies | 37% ± 19% | |
| natural killer cell | 7 studies | 17% ± 2% | |
| ciliated cell | 7 studies | 40% ± 17% | |
| oligodendrocyte precursor cell | 7 studies | 26% ± 8% | |
| myofibroblast cell | 6 studies | 21% ± 3% | |
| renal alpha-intercalated cell | 6 studies | 34% ± 8% | |
| neuron | 6 studies | 28% ± 12% | |
| enterocyte | 6 studies | 37% ± 6% | |
| memory B cell | 6 studies | 18% ± 3% | |
| GABAergic neuron | 6 studies | 36% ± 18% | |
| kidney loop of Henle epithelial cell | 5 studies | 21% ± 3% | |
| abnormal cell | 5 studies | 28% ± 12% | |
| gamma-delta T cell | 5 studies | 31% ± 8% | |
| secretory cell | 5 studies | 48% ± 17% | |
| endothelial cell of vascular tree | 5 studies | 19% ± 4% | |
| interneuron | 5 studies | 37% ± 19% | |
| club cell | 4 studies | 31% ± 20% | |
| respiratory goblet cell | 4 studies | 26% ± 14% | |
| pancreatic A cell | 4 studies | 28% ± 10% | |
| plasmablast | 4 studies | 32% ± 19% | |
| IgG plasma cell | 4 studies | 22% ± 2% | |
| astrocyte | 4 studies | 24% ± 5% | |
| vein endothelial cell | 4 studies | 22% ± 5% | |
| duct epithelial cell | 3 studies | 22% ± 4% | |
| neural crest cell | 3 studies | 23% ± 4% | |
| IgA plasma cell | 3 studies | 25% ± 2% | |
| retinal bipolar neuron | 3 studies | 37% ± 13% | |
| OFF-bipolar cell | 3 studies | 27% ± 4% | |
| retinal ganglion cell | 3 studies | 42% ± 20% | |
| extravillous trophoblast | 3 studies | 30% ± 10% | |
| immature B cell | 3 studies | 25% ± 7% | |
| serous secreting cell | 3 studies | 15% ± 0% | |
| lymphocyte | 3 studies | 27% ± 7% | |
| germinal center B cell | 3 studies | 24% ± 4% | |
| macrophage | 3 studies | 18% ± 3% | |
| pancreatic ductal cell | 3 studies | 37% ± 11% | |
| goblet cell | 3 studies | 21% ± 5% | |
| glial cell | 3 studies | 33% ± 23% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
|---|---|---|---|---|---|---|
| esophagus | 100% | 1665.50 | 1445 / 1445 | 100% | 65.28 | 183 / 183 |
| ovary | 100% | 1917.26 | 180 / 180 | 100% | 54.02 | 430 / 430 |
| lung | 100% | 2236.71 | 577 / 578 | 100% | 65.37 | 1153 / 1155 |
| breast | 100% | 2054.59 | 459 / 459 | 99% | 33.46 | 1106 / 1118 |
| brain | 99% | 2438.33 | 2617 / 2642 | 100% | 54.98 | 704 / 705 |
| pancreas | 100% | 2262.98 | 328 / 328 | 99% | 62.66 | 176 / 178 |
| prostate | 100% | 1624.90 | 245 / 245 | 98% | 27.12 | 494 / 502 |
| uterus | 100% | 2544.13 | 170 / 170 | 98% | 41.12 | 448 / 459 |
| thymus | 100% | 3444.87 | 653 / 653 | 97% | 81.94 | 586 / 605 |
| bladder | 100% | 1793.19 | 21 / 21 | 97% | 44.07 | 488 / 504 |
| kidney | 100% | 2149.64 | 89 / 89 | 96% | 35.42 | 862 / 901 |
| stomach | 100% | 2321.42 | 359 / 359 | 95% | 38.71 | 273 / 286 |
| skin | 100% | 2637.87 | 1806 / 1809 | 95% | 48.06 | 447 / 472 |
| adrenal gland | 100% | 1718.12 | 258 / 258 | 94% | 30.65 | 217 / 230 |
| intestine | 100% | 2142.76 | 966 / 966 | 94% | 32.04 | 497 / 527 |
| liver | 99% | 1460.00 | 223 / 226 | 82% | 16.61 | 331 / 406 |
| adipose | 100% | 2533.80 | 1204 / 1204 | 0% | 0 | 0 / 0 |
| spleen | 100% | 2020.17 | 241 / 241 | 0% | 0 | 0 / 0 |
| tonsil | 0% | 0 | 0 / 0 | 100% | 29.34 | 45 / 45 |
| ureter | 0% | 0 | 0 / 0 | 100% | 12.02 | 1 / 1 |
| blood vessel | 100% | 2379.65 | 1333 / 1335 | 0% | 0 | 0 / 0 |
| heart | 98% | 1957.99 | 847 / 861 | 0% | 0 | 0 / 0 |
| muscle | 95% | 716.94 | 760 / 803 | 0% | 0 | 0 / 0 |
| lymph node | 0% | 0 | 0 / 0 | 93% | 21.22 | 27 / 29 |
| eye | 0% | 0 | 0 / 0 | 53% | 9.44 | 42 / 80 |
| peripheral blood | 27% | 759.04 | 255 / 929 | 0% | 0 | 0 / 0 |
| abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| GO_0007165 | Biological process | signal transduction |
| GO_0008150 | Biological process | biological_process |
| GO_0005615 | Cellular component | extracellular space |
| GO_0070062 | Cellular component | extracellular exosome |
| GO_0031089 | Cellular component | platelet dense granule lumen |
| GO_0005576 | Cellular component | extracellular region |
| GO_0005794 | Cellular component | Golgi apparatus |
| GO_0030246 | Molecular function | carbohydrate binding |
| GO_0005515 | Molecular function | protein binding |
| GO_0005125 | Molecular function | cytokine activity |
| Gene name | FAM3C |
| Protein name | FAM3 metabolism regulating signaling molecule C Protein FAM3C (Interleukin-like EMT inducer) |
| Synonyms | GS3786 ILEI |
| Description | FUNCTION: May be involved in retinal laminar formation. Promotes epithelial to mesenchymal transition. |
| Accessions | C9JP35 C9JMN4 ENST00000359943.8 ENST00000426156.1 ENST00000412653.5 Q92520 |