Name | Number of supported studies | Average coverage | |
---|---|---|---|
glutamatergic neuron | 6 studies | 35% ± 15% | |
endothelial cell | 5 studies | 22% ± 5% | |
mast cell | 5 studies | 34% ± 13% | |
neuron | 4 studies | 36% ± 18% | |
GABAergic neuron | 4 studies | 37% ± 11% | |
astrocyte | 4 studies | 29% ± 11% | |
oligodendrocyte | 4 studies | 25% ± 5% | |
retinal rod cell | 3 studies | 19% ± 4% | |
interneuron | 3 studies | 39% ± 15% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 6 studies | 30% ± 9% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 4033.72 | 1445 / 1445 | 100% | 21.39 | 183 / 183 |
brain | 100% | 4090.23 | 2641 / 2642 | 100% | 34.19 | 705 / 705 |
skin | 100% | 3078.38 | 1807 / 1809 | 100% | 25.86 | 471 / 472 |
thymus | 100% | 2197.35 | 652 / 653 | 99% | 12.47 | 596 / 605 |
prostate | 100% | 3093.14 | 245 / 245 | 98% | 10.92 | 492 / 502 |
adrenal gland | 100% | 5519.49 | 258 / 258 | 98% | 16.30 | 225 / 230 |
uterus | 100% | 4143.32 | 170 / 170 | 97% | 16.16 | 446 / 459 |
lung | 100% | 2728.05 | 577 / 578 | 97% | 15.00 | 1121 / 1155 |
intestine | 100% | 2920.15 | 965 / 966 | 96% | 11.25 | 508 / 527 |
kidney | 100% | 2099.72 | 89 / 89 | 96% | 13.15 | 867 / 901 |
breast | 100% | 2228.13 | 459 / 459 | 96% | 12.56 | 1072 / 1118 |
pancreas | 98% | 1839.78 | 323 / 328 | 97% | 13.56 | 173 / 178 |
stomach | 100% | 2557.04 | 359 / 359 | 95% | 12.39 | 272 / 286 |
bladder | 100% | 3518.48 | 21 / 21 | 94% | 12.13 | 472 / 504 |
ovary | 100% | 3237.58 | 180 / 180 | 89% | 11.00 | 383 / 430 |
liver | 95% | 1278.71 | 214 / 226 | 67% | 5.97 | 273 / 406 |
adipose | 100% | 2565.18 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 3939.02 | 1335 / 1335 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 100% | 22.86 | 80 / 80 |
muscle | 100% | 2679.72 | 803 / 803 | 0% | 0 | 0 / 0 |
spleen | 100% | 2983.42 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 18.26 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 4.68 | 1 / 1 |
heart | 100% | 4566.02 | 857 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 94% | 3147.58 | 870 / 929 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 93% | 7.05 | 27 / 29 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0030307 | Biological process | positive regulation of cell growth |
GO_0015012 | Biological process | heparan sulfate proteoglycan biosynthetic process |
GO_1900016 | Biological process | negative regulation of cytokine production involved in inflammatory response |
GO_0010838 | Biological process | positive regulation of keratinocyte proliferation |
GO_0045617 | Biological process | negative regulation of keratinocyte differentiation |
GO_0050728 | Biological process | negative regulation of inflammatory response |
GO_0051897 | Biological process | positive regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction |
GO_0106015 | Biological process | negative regulation of inflammatory response to wounding |
GO_2000972 | Biological process | positive regulation of detection of glucose |
GO_0006486 | Biological process | protein glycosylation |
GO_0005886 | Cellular component | plasma membrane |
GO_0005789 | Cellular component | endoplasmic reticulum membrane |
GO_0005794 | Cellular component | Golgi apparatus |
GO_0005783 | Cellular component | endoplasmic reticulum |
GO_0005634 | Cellular component | nucleus |
GO_0000287 | Molecular function | magnesium ion binding |
GO_0016500 | Molecular function | protein-hormone receptor activity |
GO_0016757 | Molecular function | glycosyltransferase activity |
GO_0005515 | Molecular function | protein binding |
GO_0001888 | Molecular function | glucuronyl-galactosyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity |
Gene name | EXTL3 |
Protein name | Exostosin like glycosyltransferase 3 Exostosin-like 3 (EC 2.4.1.223) (EXT-related protein 1) (Glucuronyl-galactosyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase) (Hereditary multiple exostoses gene isolog) (Multiple exostosis-like protein 3) (Putative tumor suppressor protein EXTL3) |
Synonyms | EXTL1L KIAA0519 EXTR1 |
Description | FUNCTION: Glycosyltransferase which regulates the biosynthesis of heparan sulfate (HS) . Initiates HS synthesis by transferring the first N-acetyl-alpha-D-glucosamine (alpha-GlcNAc) residue (GlcNAcT-I activity) to the tetrasaccharide linker (GlcA-Gal-Gal-Xyl-)Ser core linker . May also transfer alpha-GlcNAc residues during HS elongation (GlcNAcT-II activity) . Lacks glucuronyl transferase II (GlcAT-II) activity . Important for both skeletal development and hematopoiesis, through the formation of HS proteoglycans (HSPGs) . Through the synthesis of HS, regulates postnatal pancreatic islet maturation and insulin secretion (By similarity). .; FUNCTION: Receptor for REG3A, REG3B and REG3G, induces the activation of downstream signaling pathways such as PI3K-AKT or RAS-RAF-MEK-ERK signaling pathway . Required for the function of REG3A in regulating keratinocyte proliferation and differentiation . Required for the inhibition of skin inflammation mediated by REGA through the activation of PI3K-AKT-STAT3 pathway . Required for the function of REGA and REG3G in glucose tolerance in pancreas . Expressed in microglia, is activated by nociceptor-derived REG3G in response to endotoxins, leading to the inhibition of kynurenine pathway to prevent endotoxic death (By similarity). . |
Accessions | O43909 A0A8Q3SIB8 A0A8Q3SIF4 ENST00000696181.1 H0YB01 ENST00000696179.1 ENST00000696186.1 A0A8Q3SII2 ENST00000696178.1 ENST00000522698.1 ENST00000696182.1 ENST00000696184.1 H0YBJ7 ENST00000696177.1 ENST00000521473.5 A0A8Q3SIK7 ENST00000696180.1 ENST00000220562.9 |