EFCAB14 report

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I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
endothelial cell	23 studies	27% ± 11%	Explore
mast cell	11 studies	22% ± 9%	Explore
natural killer cell	10 studies	18% ± 3%	Explore
endothelial cell of lymphatic vessel	10 studies	20% ± 5%	Explore
macrophage	8 studies	22% ± 5%	Explore
ciliated cell	7 studies	26% ± 7%	Explore
CD16-positive, CD56-dim natural killer cell, human	7 studies	20% ± 3%	Explore
capillary endothelial cell	7 studies	19% ± 3%	Explore
endothelial cell of artery	7 studies	29% ± 13%	Explore
epithelial cell	7 studies	36% ± 13%	Explore
basal cell	6 studies	28% ± 6%	Explore
monocyte	6 studies	19% ± 4%	Explore
secretory cell	5 studies	24% ± 5%	Explore
CD8-positive, alpha-beta T cell	5 studies	20% ± 2%	Explore
classical monocyte	5 studies	23% ± 8%	Explore
pericyte	5 studies	23% ± 8%	Explore
mucosal invariant T cell	5 studies	20% ± 4%	Explore
astrocyte	5 studies	24% ± 5%	Explore
goblet cell	5 studies	27% ± 11%	Explore
CD8-positive, alpha-beta memory T cell	5 studies	20% ± 4%	Explore
oligodendrocyte	5 studies	22% ± 6%	Explore
plasmacytoid dendritic cell	5 studies	22% ± 7%	Explore
type I pneumocyte	4 studies	22% ± 5%	Explore
type II pneumocyte	4 studies	22% ± 9%	Explore
non-classical monocyte	4 studies	24% ± 9%	Explore
B cell	4 studies	18% ± 2%	Explore
CD16-negative, CD56-bright natural killer cell, human	4 studies	18% ± 2%	Explore
CD4-positive, alpha-beta T cell	4 studies	17% ± 2%	Explore
myeloid cell	4 studies	24% ± 7%	Explore
fibroblast	4 studies	22% ± 5%	Explore
gamma-delta T cell	4 studies	25% ± 9%	Explore
naive B cell	4 studies	17% ± 1%	Explore
smooth muscle cell	3 studies	19% ± 2%	Explore
ionocyte	3 studies	25% ± 4%	Explore
respiratory goblet cell	3 studies	23% ± 5%	Explore
effector memory CD8-positive, alpha-beta T cell	3 studies	17% ± 2%	Explore
hematopoietic precursor cell	3 studies	19% ± 1%	Explore
naive thymus-derived CD8-positive, alpha-beta T cell	3 studies	17% ± 1%	Explore
glomerular endothelial cell	3 studies	20% ± 2%	Explore
microglial cell	3 studies	22% ± 3%	Explore
club cell	3 studies	29% ± 9%	Explore
lymphocyte	3 studies	20% ± 4%	Explore
T cell	3 studies	23% ± 10%	Explore
endothelial cell of vascular tree	3 studies	24% ± 4%	Explore
GABAergic neuron	3 studies	34% ± 3%	Explore
glutamatergic neuron	3 studies	37% ± 7%	Explore
dendritic cell	3 studies	31% ± 13%	Explore
oligodendrocyte precursor cell	3 studies	28% ± 1%	Explore
enteroendocrine cell	3 studies	25% ± 7%	Explore
transit amplifying cell	3 studies	23% ± 10%	Explore

II. Expression across tissues

sc-RNAseq dataData table

Name	Number of supported studies	Average coverage
lung	5 studies	24% ± 7%	Explore
brain	5 studies	30% ± 5%	Explore
peripheral blood	4 studies	22% ± 5%	Explore
intestine	3 studies	20% ± 3%	Explore
liver	3 studies	19% ± 2%	Explore

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
brain	100%	6816.97	2642 / 2642	100%	34.49	705 / 705
breast	100%	9386.37	459 / 459	100%	38.18	1118 / 1118
esophagus	100%	8155.65	1445 / 1445	100%	36.36	183 / 183
ovary	100%	6907.98	180 / 180	100%	29.85	430 / 430
prostate	100%	6851.22	245 / 245	100%	29.58	502 / 502
lung	100%	8268.08	578 / 578	100%	31.11	1154 / 1155
bladder	100%	8929.67	21 / 21	100%	28.26	503 / 504
thymus	100%	8424.44	653 / 653	100%	34.67	603 / 605
stomach	100%	9011.45	359 / 359	100%	33.80	285 / 286
intestine	100%	7820.48	966 / 966	100%	27.74	525 / 527
kidney	100%	7113.11	89 / 89	99%	31.46	891 / 901
uterus	100%	8547.00	170 / 170	99%	24.09	453 / 459
skin	100%	7653.28	1809 / 1809	98%	23.77	464 / 472
pancreas	99%	3423.77	325 / 328	99%	29.30	176 / 178
adrenal gland	100%	6304.79	258 / 258	95%	15.60	218 / 230
liver	100%	3015.11	225 / 226	92%	13.15	375 / 406
adipose	100%	9745.57	1204 / 1204	0%	0	0 / 0
blood vessel	100%	9973.47	1335 / 1335	0%	0	0 / 0
lymph node	0%	0	0 / 0	100%	18.32	29 / 29
muscle	100%	5620.10	803 / 803	0%	0	0 / 0
spleen	100%	6271.98	241 / 241	0%	0	0 / 0
heart	99%	4708.46	855 / 861	0%	0	0 / 0
tonsil	0%	0	0 / 0	98%	25.79	44 / 45
eye	0%	0	0 / 0	93%	14.70	74 / 80
peripheral blood	91%	4093.41	850 / 929	0%	0	0 / 0
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0
ureter	0%	0	0 / 0	0%	0	0 / 1