Name | Number of supported studies | Average coverage | |
---|---|---|---|
fibroblast | 29 studies | 27% ± 9% | |
endothelial cell | 23 studies | 30% ± 12% | |
macrophage | 20 studies | 25% ± 11% | |
endothelial cell of lymphatic vessel | 14 studies | 28% ± 8% | |
smooth muscle cell | 14 studies | 25% ± 5% | |
astrocyte | 13 studies | 34% ± 16% | |
oligodendrocyte precursor cell | 13 studies | 31% ± 15% | |
pericyte | 12 studies | 25% ± 7% | |
oligodendrocyte | 12 studies | 32% ± 13% | |
adipocyte | 10 studies | 42% ± 11% | |
basal cell | 9 studies | 27% ± 14% | |
GABAergic neuron | 9 studies | 39% ± 21% | |
glutamatergic neuron | 9 studies | 38% ± 26% | |
microglial cell | 9 studies | 28% ± 9% | |
myofibroblast cell | 9 studies | 24% ± 7% | |
epithelial cell | 9 studies | 33% ± 16% | |
type I pneumocyte | 8 studies | 23% ± 7% | |
myeloid cell | 8 studies | 27% ± 6% | |
B cell | 7 studies | 21% ± 5% | |
amacrine cell | 7 studies | 26% ± 9% | |
dendritic cell | 7 studies | 26% ± 7% | |
classical monocyte | 6 studies | 20% ± 5% | |
interneuron | 6 studies | 42% ± 23% | |
club cell | 6 studies | 23% ± 5% | |
retina horizontal cell | 6 studies | 37% ± 13% | |
ciliated cell | 6 studies | 23% ± 8% | |
type II pneumocyte | 6 studies | 21% ± 5% | |
non-classical monocyte | 5 studies | 20% ± 3% | |
abnormal cell | 5 studies | 34% ± 15% | |
neuron | 5 studies | 29% ± 13% | |
retinal ganglion cell | 5 studies | 32% ± 11% | |
adventitial cell | 5 studies | 25% ± 7% | |
cardiac muscle cell | 5 studies | 30% ± 7% | |
Mueller cell | 5 studies | 23% ± 7% | |
connective tissue cell | 5 studies | 23% ± 5% | |
monocyte | 5 studies | 27% ± 9% | |
secretory cell | 4 studies | 23% ± 7% | |
granule cell | 4 studies | 25% ± 6% | |
mesothelial cell | 4 studies | 22% ± 6% | |
vein endothelial cell | 4 studies | 24% ± 10% | |
lymphocyte | 4 studies | 25% ± 4% | |
retinal cone cell | 4 studies | 22% ± 7% | |
retinal rod cell | 4 studies | 28% ± 7% | |
respiratory goblet cell | 4 studies | 23% ± 2% | |
endothelial cell of vascular tree | 4 studies | 30% ± 13% | |
alveolar macrophage | 4 studies | 32% ± 11% | |
conventional dendritic cell | 3 studies | 30% ± 11% | |
hematopoietic precursor cell | 3 studies | 18% ± 4% | |
GABAergic interneuron | 3 studies | 25% ± 5% | |
mononuclear phagocyte | 3 studies | 23% ± 4% | |
OFF-bipolar cell | 3 studies | 22% ± 7% | |
glycinergic amacrine cell | 3 studies | 23% ± 6% | |
rod bipolar cell | 3 studies | 21% ± 7% | |
memory B cell | 3 studies | 16% ± 1% | |
hepatocyte | 3 studies | 35% ± 17% | |
muscle cell | 3 studies | 36% ± 18% | |
neural progenitor cell | 3 studies | 21% ± 6% | |
T cell | 3 studies | 19% ± 2% | |
capillary endothelial cell | 3 studies | 18% ± 2% | |
goblet cell | 3 studies | 30% ± 16% | |
transit amplifying cell | 3 studies | 41% ± 28% | |
mucus secreting cell | 3 studies | 26% ± 7% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 2697.63 | 1445 / 1445 | 99% | 22.01 | 182 / 183 |
prostate | 100% | 1950.35 | 245 / 245 | 98% | 12.61 | 494 / 502 |
lung | 100% | 2350.00 | 576 / 578 | 99% | 12.38 | 1140 / 1155 |
breast | 100% | 2798.35 | 459 / 459 | 98% | 14.73 | 1099 / 1118 |
brain | 98% | 1334.73 | 2597 / 2642 | 100% | 16.14 | 703 / 705 |
bladder | 100% | 2771.29 | 21 / 21 | 97% | 12.05 | 487 / 504 |
ovary | 100% | 2335.46 | 180 / 180 | 96% | 7.59 | 411 / 430 |
thymus | 100% | 1921.35 | 652 / 653 | 95% | 10.20 | 577 / 605 |
stomach | 99% | 1342.13 | 355 / 359 | 96% | 14.83 | 275 / 286 |
intestine | 100% | 2073.71 | 966 / 966 | 95% | 12.20 | 500 / 527 |
kidney | 99% | 1119.63 | 88 / 89 | 95% | 12.33 | 858 / 901 |
adrenal gland | 100% | 1939.48 | 258 / 258 | 94% | 8.50 | 216 / 230 |
uterus | 100% | 2810.89 | 170 / 170 | 94% | 11.85 | 430 / 459 |
pancreas | 96% | 921.52 | 315 / 328 | 97% | 9.94 | 172 / 178 |
skin | 100% | 3952.65 | 1809 / 1809 | 88% | 12.81 | 415 / 472 |
liver | 99% | 1001.58 | 224 / 226 | 82% | 6.39 | 333 / 406 |
blood vessel | 100% | 3264.47 | 1335 / 1335 | 0% | 0 | 0 / 0 |
muscle | 100% | 2733.13 | 803 / 803 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 100% | 6.14 | 1 / 1 |
adipose | 100% | 3415.09 | 1203 / 1204 | 0% | 0 | 0 / 0 |
spleen | 100% | 1367.10 | 240 / 241 | 0% | 0 | 0 / 0 |
heart | 94% | 1425.02 | 812 / 861 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 93% | 12.67 | 42 / 45 |
lymph node | 0% | 0 | 0 / 0 | 76% | 6.84 | 22 / 29 |
eye | 0% | 0 | 0 / 0 | 45% | 3.28 | 36 / 80 |
peripheral blood | 36% | 923.56 | 335 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0006897 | Biological process | endocytosis |
GO_0016189 | Biological process | synaptic vesicle to endosome fusion |
GO_0044788 | Biological process | modulation by host of viral process |
GO_0099565 | Biological process | chemical synaptic transmission, postsynaptic |
GO_0006906 | Biological process | vesicle fusion |
GO_0045022 | Biological process | early endosome to late endosome transport |
GO_0098978 | Cellular component | glutamatergic synapse |
GO_0098685 | Cellular component | Schaffer collateral - CA1 synapse |
GO_0055037 | Cellular component | recycling endosome |
GO_0005769 | Cellular component | early endosome |
GO_0031901 | Cellular component | early endosome membrane |
GO_0070062 | Cellular component | extracellular exosome |
GO_0098794 | Cellular component | postsynapse |
GO_0005829 | Cellular component | cytosol |
GO_0005969 | Cellular component | serine-pyruvate aminotransferase complex |
GO_0044308 | Cellular component | axonal spine |
GO_0042803 | Molecular function | protein homodimerization activity |
GO_0030742 | Molecular function | GTP-dependent protein binding |
GO_0005545 | Molecular function | 1-phosphatidylinositol binding |
GO_0008270 | Molecular function | zinc ion binding |
GO_0005516 | Molecular function | calmodulin binding |
GO_0005515 | Molecular function | protein binding |
Gene name | EEA1 |
Protein name | Early endosome antigen 1 (Endosome-associated protein p162) (Zinc finger FYVE domain-containing protein 2) Early endosome antigen 1 EEA1 protein |
Synonyms | ZFYVE2 |
Description | FUNCTION: Binds phospholipid vesicles containing phosphatidylinositol 3-phosphate and participates in endosomal trafficking. |
Accessions | Q15075 F8WE79 ENST00000549790.1 ENST00000322349.13 Q05D76 ENST00000418984.7 ENST00000553019.1 F8W119 F8VUZ7 |